View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_low_7 (Length: 531)
Name: NF14614_low_7
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 17 - 511
Target Start/End: Complemental strand, 47212793 - 47212299
Alignment:
| Q |
17 |
aaagaagataccaaacttgaaatagcaaagcattgaaaggaaagcttgtgcaatgacagcagtgaagaggaagttgacacaaactgttacactttgtcct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47212793 |
aaagaagataccaaacttgaaatagcaaagcattgaaaggaaagcttgtgcaatgacagcagtgaagaggaagttgacacaaactgttacactttgtcct |
47212694 |
T |
|
| Q |
117 |
gcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaatgctgacacaaaaatacaaaccataacaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47212693 |
gcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaatgctgacacaaaaatacaaaccataacaa |
47212594 |
T |
|
| Q |
217 |
ctacaagagctgcatacccttttgagagttcctcagaatgatccttcactttgattcctagtacaattgctatcaccatttgtgacaagaacatttgaac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47212593 |
ctacaagagctgcatacccttttgagagttcctcagaatgatccttcactttgattcctagtacaattgctatcaccatttgtgacaacaacatttgaac |
47212494 |
T |
|
| Q |
317 |
accggcttcgagtaatagctttcgacgaccaagtttatccactgaatatattgaaactatagttgagataacattgattgcaccagtaatcacagcagag |
416 |
Q |
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||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47212493 |
accagcttccagtaatagctttcgacgaccaagtttatccactgaatatattgaaactatagttgagatgacattgattgcaccagtaatcacagcagag |
47212394 |
T |
|
| Q |
417 |
taaagtgcagcatcattcttgaatcctaaggtgttgaacagaactggagcatagaacattatcgcattgatgccagtgaattgctgaaaaatctg |
511 |
Q |
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| T |
47212393 |
taaagtgcagcatcattcttaaatcctaaggtgttgaacagaactggagcatagaacattatcgcattgatgccagtgaattgctgaaaaatctg |
47212299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 499
Target Start/End: Complemental strand, 47185768 - 47185683
Alignment:
| Q |
414 |
gagtaaagtgcagcatcattcttgaatcctaaggtgttgaacagaactggagcatagaacattatcgcattgatgccagtgaattg |
499 |
Q |
| |
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|||||||||| ||||||||| | ||||| || |||||||||| ||||||||||||||||| || ||||||||||| |||||||| |
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| T |
47185768 |
gagtaaagtgaagcatcattgtgaaatcccaaagtgttgaacaatactggagcatagaacatgattgcattgatgccggtgaattg |
47185683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 187
Target Start/End: Complemental strand, 47186077 - 47185995
Alignment:
| Q |
105 |
acactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaa |
187 |
Q |
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| T |
47186077 |
acactttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
47185995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 187
Target Start/End: Complemental strand, 47198616 - 47198534
Alignment:
| Q |
105 |
acactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaa |
187 |
Q |
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||||||||||| || || | |||||| | |||||| ||||||| ||||| | |||| ||||||||||||||||||||||||| |
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| T |
47198616 |
acactttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
47198534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 502
Target Start/End: Complemental strand, 47198307 - 47198219
Alignment:
| Q |
414 |
gagtaaagtgcagcatcattcttgaatcctaaggtgttgaacagaactggagcatagaacattatcgcattgatgccagtgaattgctg |
502 |
Q |
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|||||||||| ||||||||| | ||||| | ||| |||||| ||||||||||||||||| || ||||||||||| ||| ||||||| |
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| T |
47198307 |
gagtaaagtgaagcatcattgtgaaatcccagagtgctgaacaatactggagcatagaacatgattgcattgatgccggtgcattgctg |
47198219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 499
Target Start/End: Original strand, 748499 - 748980
Alignment:
| Q |
18 |
aagaagataccaaacttgaaatagcaaagcattgaaaggaaagcttgtgcaatgacagcagtgaagaggaagttgacacaaactgttacactttgtcctg |
117 |
Q |
| |
|
|||||||| ||||||||||| | ||| | ||| || || ||||| || ||||||||| ||||| | | ||||||||||||||| ||||||||||| | |
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| T |
748499 |
aagaagattccaaacttgaagtggcataacatagatagaaaagcctgagcaatgacaaaggtgaacaacatgttgacacaaactgtgacactttgtccag |
748598 |
T |
|
| Q |
118 |
cagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaatgctgacacaaaaatacaaaccataacaac |
217 |
Q |
| |
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| || |||||||| ||||||||| |||||||||||||||||||| | || |||||||| ||||| ||||| || ||||| ||| | || |||| | ||| |
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| T |
748599 |
ctgatcgagtctcgagtggaaatgtctcacttggaataagccaaccgagaggaccccaagaccaagcaaaggcagacacgaaagtgcataccaagataac |
748698 |
T |
|
| Q |
218 |
tacaagagctgcatacccttttgagagttcctcagaatgatccttcactttgattcctagtacaattgctatcaccatttgtgacaagaacatttgaaca |
317 |
Q |
| |
|
|||| |||||| |||||||| || || ||||||||||| |||| ||||| || || | ||||||||||| ||||| |||||||||||||| ||| |
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| T |
748699 |
aacaaatattgcatagccttttgaaagatcgtcagaatgatcagtcaccttgatcccaagaatgattgctatcacaatttgagacaagaacatttgtaca |
748798 |
T |
|
| Q |
318 |
ccggcttcgagtaatagctttcgacgaccaagtttatccactgaatatattgaaactatagttgagataacattgattgcaccagtaatcacagcagagt |
417 |
Q |
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|||||||| | | || | | ||||||||||||||||| || | || || || || || || |||| ||||| | |||||||||||||||||| || | |
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| T |
748799 |
ccggcttccaacagtaacatacgacgaccaagtttatcaacgaagtagatagacacaattgtggagaggacattaactgcaccagtaatcacagctgaat |
748898 |
T |
|
| Q |
418 |
aaagtgcagcatcattcttgaatcctaaggtgttgaacagaactggagcatagaacattatcgcattgatgccagtgaattg |
499 |
Q |
| |
|
| || | |||||||||||||||||| | || ||||||| |||||| ||||| ||||| ||||| |||||||| |||||||| |
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| T |
748899 |
agagggaagcatcattcttgaatcccactgtattgaacaaaactggtgcataaaacatgatcgcgttgatgcctgtgaattg |
748980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 41414021 - 41414096
Alignment:
| Q |
107 |
actttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccat |
182 |
Q |
| |
|
|||||| ||||| ||||| | |||| ||||||||||||||||||||| |||| |||| ||||||||||||||| |
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|
| T |
41414021 |
actttgccctgctgaacggatttctaatggaaatatctcacttggaattgtccaaccaagaggaccccatgaccat |
41414096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 36202786 - 36202701
Alignment:
| Q |
103 |
ttacactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaat |
188 |
Q |
| |
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|||||||||| ||||||||||| |||| | ||| || |||||||| |||| | |||| |||| |||||||||||||| |||||| |
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| T |
36202786 |
ttacactttgagctgcagaacgaatctccaatgggaaaatctcactaggaaccaaccaaccaagaggaccccatgaccaagcaaat |
36202701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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