View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14614_low_71 (Length: 227)

Name: NF14614_low_71
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14614_low_71
NF14614_low_71
[»] chr1 (6 HSPs)
chr1 (1-227)||(23827891-23828117)
chr1 (34-223)||(24682448-24682637)
chr1 (125-192)||(48469812-48469879)
chr1 (125-169)||(45566382-45566426)
chr1 (125-169)||(49228714-49228758)
chr1 (125-164)||(17331928-17331967)
[»] chr7 (7 HSPs)
chr7 (125-205)||(4267488-4267564)
chr7 (125-205)||(17475099-17475175)
chr7 (125-205)||(17510683-17510759)
chr7 (125-205)||(17542455-17542531)
chr7 (125-205)||(17578039-17578115)
chr7 (125-205)||(41202442-41202518)
chr7 (133-205)||(49113196-49113264)
[»] chr3 (2 HSPs)
chr3 (125-205)||(50737326-50737402)
chr3 (125-205)||(50775453-50775529)
[»] chr6 (5 HSPs)
chr6 (125-187)||(12076053-12076115)
chr6 (125-187)||(12271618-12271680)
chr6 (141-217)||(20143363-20143435)
chr6 (141-217)||(22189404-22189476)
chr6 (65-206)||(26519570-26519696)
[»] chr5 (2 HSPs)
chr5 (1-217)||(4970484-4970690)
chr5 (125-205)||(3436108-3436184)
[»] chr2 (1 HSPs)
chr2 (125-187)||(9471471-9471533)
[»] chr4 (2 HSPs)
chr4 (125-187)||(16030288-16030350)
chr4 (65-217)||(3410067-3410204)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 23828117 - 23827891
Alignment:
Q  1 tgtggatgttgtgaaccttgcataagaccaagtgactttttggatctttaaaacttttgtcatattattctggataattgatattcttaatttagaatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23828117 tgtggatgttgtgaaccttgcataagaccaagtgactttttggatctttaaaacttttgtcatattattctggataattgatattcttaatttagaatct 23828018  T
Q  101 tagtcactttgggtcattggtgacttatgttaatgttactatgttagtatggataattgttattctcttagactaatattaatttattgttcttttgttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23828017 tagtcactttgggtcattggtgacttatgttaatgttactatgttagtatggataattgttattctcttagactaatattaatttattgttcttttgttc 23827918  T
Q  201 actatttgtgtatatttgttcttatgt 227  Q
    |||||||||||||||||||||||||||    
T  23827917 actatttgtgtatatttgttcttatgt 23827891  T

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Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 34 - 223
Target Start/End: Complemental strand, 24682637 - 24682448
Alignment:
Q  34 gactttttggatctttaaaacttttgtcatattattctggataattgatattcttaatttagaatcttagtcactttgggtcattggtgacttatgttaa 133  Q
    ||||||| ||||| ||||||||||||| || ||||| |||||||||| |||| | |||||||||||||||||| | ||| | |||| |   ||| |||||    
T  24682637 gacttttcggatcattaaaacttttgttatgttattttggataattggtattttgaatttagaatcttagtcattatggataattgatttgttacgttaa 24682538  T
Q  134 tgttactatgttagtatggataattgttattctcttagactaatattaatttattgttcttttgttcactatttgtgtatatttgttctt 223  Q
    |||||||||||||||||| |||||| |||||||||| ||  ||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  24682537 tgttactatgttagtatgaataatttttattctcttggatcaatcttaatttattgttcttttgttcactatttgtgtacatttgttctt 24682448  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 48469879 - 48469812
Alignment:
Q  125 ttatgttaatgttactatgttagtatggataattgttattctcttagactaatattaatttattgttc 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||  ||||||||||||||    
T  48469879 ttatgttaatgttactatgttagtatggataattgttattctcttggaccaaacttaatttattgttc 48469812  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 45566382 - 45566426
Alignment:
Q  125 ttatgttaatgttactatgttagtatggataattgttattctctt 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  45566382 ttatgttaatgttactatgttagtatggataattgttattctctt 45566426  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 49228758 - 49228714
Alignment:
Q  125 ttatgttaatgttactatgttagtatggataattgttattctctt 169  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  49228758 ttatgttaatgttactatgttagtatgaataattgttattctctt 49228714  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 125 - 164
Target Start/End: Original strand, 17331928 - 17331967
Alignment:
Q  125 ttatgttaatgttactatgttagtatggataattgttatt 164  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17331928 ttatgttaatgttactatgttagtatggataattgttatt 17331967  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 4267488 - 4267564
Alignment:
Q  125 ttatgttaatgttactatgttagtatggataattgttattctcttagactaatattaatttattgttcttttgttcactat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||  ||||||||    |||||||||||||||    
T  4267488 ttatgttaatgttactatgttagtatggataattgttattctcttggaccaaacttaattta----tcttttgttcactat 4267564  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 17475175 - 17475099
Alignment:
Q  125 ttatgttaatgttactatgttagtatggataattgttattctcttagactaatattaatttattgttcttttgttcactat 205  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||| ||  ||||||||    |||||||||||||||    
T  17475175 ttatgttaatgttactatattagtatggataattgttattctcttggaccaaacttaattta----tcttttgttcactat 17475099  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 17510759 - 17510683
Alignment:
Q  125 ttatgttaatgttactatgttagtatggataattgttattctcttagactaatattaatttattgttcttttgttcactat 205  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||| ||  ||||||||    |||||||||||||||    
T  17510759 ttatgttaatgttactatgttagtatggataattgttattcttttggaccaaacttaattta----tcttttgttcactat 17510683  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 17542455 - 17542531
Alignment:
Q  125 ttatgttaatgttactatgttagtatggataattgttattctcttagactaatattaatttattgttcttttgttcactat 205  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||| ||  ||||||||    |||||||||||||||    
T  17542455 ttatgttaatgttactatgttagtatggataattgttattcttttggaccaaacttaattta----tcttttgttcactat 17542531  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 17578039 - 17578115
Alignment:
Q  125 ttatgttaatgttactatgttagtatggataattgttattctcttagactaatattaatttattgttcttttgttcactat 205  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||| ||  ||||||||    |||||||||||||||    
T  17578039 ttatgttaatgttactatattagtatggataattgttattctcttggaccaaacttaattta----tcttttgttcactat 17578115  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 41202442 - 41202518
Alignment:
Q  125 ttatgttaatgttactatgttagtatggataattgttattctcttagactaatattaatttattgttcttttgttcactat 205  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||| ||  ||||||||    |||||||||||||||    
T  41202442 ttatgttaatgttactatcttagtatggataattgttattctcttggaccaaacttaattta----tcttttgttcactat 41202518  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 49113196 - 49113264
Alignment:
Q  133 atgttactatgttagtatggataattgttattctcttagactaatattaatttattgttcttttgttcactat 205  Q
    ||||||||||||||||||| ||||||||||||||||| ||| ||  ||||||||    |||||||||||||||    
T  49113196 atgttactatgttagtatgaataattgttattctcttggaccaaacttaattta----tcttttgttcactat 49113264  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 50737402 - 50737326
Alignment:
Q  125 ttatgttaatgttactatgttagtatggataattgttattctcttagactaatattaatttattgttcttttgttcactat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||  ||||||||    |||||||||||||||    
T  50737402 ttatgttaatgttactatgttagtatggataattgttattctcttggaccaaacttaattta----tcttttgttcactat 50737326  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 50775453 - 50775529
Alignment:
Q  125 ttatgttaatgttactatgttagtatggataattgttattctcttagactaatattaatttattgttcttttgttcactat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||  ||||||||    |||||||||||||||    
T  50775453 ttatgttaatgttactatgttagtatggataattgttattctcttggaccaaacttaattta----tcttttgttcactat 50775529  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 12076115 - 12076053
Alignment:
Q  125 ttatgttaatgttactatgttagtatggataattgttattctcttagactaatattaatttat 187  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||| ||  |||||||||    
T  12076115 ttatgttaatgttactatgttagtatgtataattgttattctcttggaccaaacttaatttat 12076053  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 12271680 - 12271618
Alignment:
Q  125 ttatgttaatgttactatgttagtatggataattgttattctcttagactaatattaatttat 187  Q
    |||||||||||||| ||| |||||||||||||||||||||||||| ||| ||  |||||||||    
T  12271680 ttatgttaatgttattatcttagtatggataattgttattctcttggaccaaacttaatttat 12271618  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 20143363 - 20143435
Alignment:
Q  141 atgttagtatggataattgttattctcttagactaatattaatttattgttcttttgttcactatttgtgtatattt 217  Q
    |||||| |||||||||||||||||||||| ||  ||| ||||||||    ||||||||||||| |||||||||||||    
T  20143363 atgttattatggataattgttattctcttggatcaatcttaattta----tcttttgttcactgtttgtgtatattt 20143435  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 22189476 - 22189404
Alignment:
Q  141 atgttagtatggataattgttattctcttagactaatattaatttattgttcttttgttcactatttgtgtatattt 217  Q
    |||||| |||||||||||||||||||||| ||  ||| ||||||||    ||||||||||||| |||||||||||||    
T  22189476 atgttattatggataattgttattctcttggatcaatcttaattta----tcttttgttcactgtttgtgtatattt 22189404  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 206
Target Start/End: Original strand, 26519570 - 26519696
Alignment:
Q  65 ttattctggataattgatattcttaatttagaatcttagtcactttgggtcattggtgacttatgttaatgttactatgttagtatggataattgttatt 164  Q
    ||||||||||||||| ||||| | |||||||||||||   || | ||| | ||||||||||| ||||||||||||        |||||||||||||||||    
T  26519570 ttattctggataattaatattttgaatttagaatctt---cattctggataattggtgacttgtgttaatgttac--------tatggataattgttatt 26519658  T
Q  165 ctcttagactaatattaatttattgttcttttgttcactatt 206  Q
    ||||| ||  ||| ||||||||    ||||||||||||||||    
T  26519659 ctcttggatcaatcttaattta----tcttttgttcactatt 26519696  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 4970690 - 4970484
Alignment:
Q  1 tgtggatgttgtgaaccttgcataagaccaagtgactttttggatctttaaaacttttgtcat-------attattctggataattgatattcttaattt 93  Q
    |||| ||||||||||||||| | ||||  ||||||||||||||||| ||||||||||||| ||        |||||||||||||||  |||| | |||||    
T  4970690 tgtgaatgttgtgaaccttgaagaagattaagtgactttttggatcattaaaacttttgttatgttattacttattctggataattagtattttgaattt 4970591  T
Q  94 agaatcttagtcactttgggtcattggtgacttatgttaatgttactatgttagtatggataattgttattctcttagactaatattaatttattgttct 193  Q
    |||||||   ||| | ||| | ||||||||||| ||||||||||||        ||||||||||||||||  |||| ||  ||| ||||||||    |||    
T  4970590 agaatct---tcattctggataattggtgacttgtgttaatgttac--------tatggataattgttat--tcttggatcaatcttaattta----tct 4970508  T
Q  194 tttgttcactatttgtgtatattt 217  Q
    ||||||||||||||||||||||||    
T  4970507 tttgttcactatttgtgtatattt 4970484  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 3436184 - 3436108
Alignment:
Q  125 ttatgttaatgttactatgttagtatggataattgttattctcttagactaatattaatttattgttcttttgttcactat 205  Q
    |||||| ||||||||||| ||||||||||||||| |||||||||| ||| ||  ||||||||    |||||||||||||||    
T  3436184 ttatgtcaatgttactatattagtatggataattattattctcttggaccaaacttaattta----tcttttgttcactat 3436108  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 9471471 - 9471533
Alignment:
Q  125 ttatgttaatgttactatgttagtatggataattgttattctcttagactaatattaatttat 187  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||| ||  |||||||||    
T  9471471 ttatgttaatgttactatcttagtatggataattgttattctcttggaccaaacttaatttat 9471533  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 16030288 - 16030350
Alignment:
Q  125 ttatgttaatgttactatgttagtatggataattgttattctcttagactaatattaatttat 187  Q
    ||||||||||||||||||||| |||||||||||||||||| |||| ||| ||  |||||||||    
T  16030288 ttatgttaatgttactatgttggtatggataattgttattttcttggaccaaacttaatttat 16030350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 217
Target Start/End: Complemental strand, 3410204 - 3410067
Alignment:
Q  65 ttattctggataattgatattcttaatttagaatcttagtcactttgggtcattggtgacttatgttaatgttactatgttagtatggataattgttatt 164  Q
    |||||||||||||||  |||| | |||||||||||||   || | ||| | ||||||||||| ||||||||||||||||        ||||||| |||||    
T  3410204 ttattctggataattagtattttgaatttagaatctt---cattctggataattggtgacttgtgttaatgttactatg--------gataattattatt 3410116  T
Q  165 ctcttagactaatattaatttattgttcttttgttcactatttgtgtatattt 217  Q
    || || ||  ||| |||||||||    ||||||||||||||||||||||||||    
T  3410115 ctattggatcaatcttaatttat----cttttgttcactatttgtgtatattt 3410067  T

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