View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_low_73 (Length: 223)
Name: NF14614_low_73
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_low_73 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 45174907 - 45175096
Alignment:
| Q |
12 |
tagcaaaggaacaccgtagaaatggaagacagtcgaaactttcaaaaaagtatggcttcaagtgaatgaatgaacagaaggcgacagagacttgtacata |
111 |
Q |
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| T |
45174907 |
tagcaaaggaacaccgtagaaatggaagacagtcgaaactttcaaaacagtatggcttcaagtgaatgaatgaacagaaggcgacagagacttgtacata |
45175006 |
T |
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| Q |
112 |
ggtgaatgaataaacagagagcagacggaggcaaacatgtatgtattagtacaaattaaggtcctacattccaactttcaccaacttggt |
201 |
Q |
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| T |
45175007 |
ggtgaatgaataaacagagagcagacggaggcaaacatgtatgtattagtacaaattaaggtcctacattccaactttcaccaacttggt |
45175096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 136
Target Start/End: Original strand, 45174290 - 45174409
Alignment:
| Q |
12 |
tagcaaaggaacaccgtagaaatggaagacagtc--gaaactttcaaaaaagtatggcttcaagtgaatgaatgaacagaaggcgacagagacttgtaca |
109 |
Q |
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| T |
45174290 |
tagcaaaggaacaccgtagaaatggaagaaaggcaggaaacttcccaaaagg---ggcttcaagtgaa----tgaacagaaagcgacagagacttgtaca |
45174382 |
T |
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| Q |
110 |
taggtgaatgaataaacagagagcaga |
136 |
Q |
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| T |
45174383 |
taggtgaatgaataaacagaaagcaga |
45174409 |
T |
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