View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_low_81 (Length: 211)
Name: NF14614_low_81
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_low_81 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 30138722 - 30138544
Alignment:
| Q |
15 |
cacagagaatttaacatcacatcttcatccaaaattttaagacgttaggtttatgaatcattttattcatatgttgttcatcatccaatttttaattcga |
114 |
Q |
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| T |
30138722 |
cacagagaatttaacatcacatcttcatctaaaattttaagacgttaggtttatgaatcattttattcgtatgttgttcatcatccaatttttaattcga |
30138623 |
T |
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| Q |
115 |
tgtgagtcttttaaatcatacttacacatgacaatttttcatttgttgtcaa-tttttcaaacaaacttgtatcgtcaa |
192 |
Q |
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| T |
30138622 |
tgtgagtcctttaactcatacttacacatgataatttttcatttgttgttaattttttccaacaaacttgtatcgtcaa |
30138544 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 57
Target Start/End: Complemental strand, 35977609 - 35977579
Alignment:
| Q |
27 |
aacatcacatcttcatccaaaattttaagac |
57 |
Q |
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| T |
35977609 |
aacatcacatcttcatccaaaattttaagac |
35977579 |
T |
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