View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14615_high_1 (Length: 294)
Name: NF14615_high_1
Description: NF14615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14615_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 24094006 - 24093736
Alignment:
| Q |
18 |
ccaaatgaccaccgattcattaagagttcaacttttatttttcttctaactttgtcttgnnnnnnnnnnncttt-------cttttcctattaaattaaa |
110 |
Q |
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| T |
24094006 |
ccaaatgaccaccgattcattaagagttcaacttttatttttcttctaactttgtcttgttttttttttttttttttttttcttttcctattaaattaaa |
24093907 |
T |
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| Q |
111 |
taagtgaaataaattgcaattaaacctcagaattttttgatgttcatttttagtagttttacaaataacatttcccattccgtcactatataccccaccg |
210 |
Q |
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| T |
24093906 |
taagtgaaataaattgcaattaaacctcataattttttgatgttcatttttagt----ttacaaataacatttcccattccgtcactatataccccaccg |
24093811 |
T |
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| Q |
211 |
catcacaccacacgaacaacgtagaaactaacaaagcaacaccttaactttagtacactacaactatacaacttc |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24093810 |
catcacaccacacgaacaacgtagaaactaacaaagcaacaccttaactttagtacactacaactatacaacttc |
24093736 |
T |
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