View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14615_low_1 (Length: 402)
Name: NF14615_low_1
Description: NF14615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14615_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 9167019 - 9166622
Alignment:
| Q |
1 |
tagtgcgatactgaatacaccgtgtcttggtaaggttaggtcaaaatactgagttgtttagttgatgattgctgtggacatgaaaagatgataacatttg |
100 |
Q |
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| T |
9167019 |
tagtacgatactgaatacaccgtgtcttggtaaggttaggtcaaaatactgagttgtttagttgatgattgctgtggacatgaaaagatgataatatttg |
9166920 |
T |
|
| Q |
101 |
tcatgaacaaagtgaatatttgcatgtgggttgtaataggtcgattcttttcttttttgttcatgtgtgatttgttgttgcattacataggagaagtaca |
200 |
Q |
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| T |
9166919 |
tcatgaacaaagtgaatatttgcatgtgggttgtaataggtcgattcttttcttttttgttcatgtgtgatttgttgttgcattacataggagaagtaca |
9166820 |
T |
|
| Q |
201 |
agaacaggccttggctcttggaagatgaaacaggtcagtcccaatttcagggtcatctagaaggttcacaatcagctacatattacctgcttatgaaggg |
300 |
Q |
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| T |
9166819 |
agaacaggccttggttcttggaagatgaaacaggtcagtcccaatttcagggtcatctagaaggttcacaatcagctacatattacctgcttatgaaggg |
9166720 |
T |
|
| Q |
301 |
aaagaaggagtttattgccattcctgttggatcctggtatgcttgttaaggattgtgttcgtggaaataactttgctctttattttcttatctgtgtt |
398 |
Q |
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| T |
9166719 |
aaagaagtagtttattgccattcctgttggatcctggtatgcttgttaaggattgtgttcgtggaaataactttgctctttattttcttatctgtgtt |
9166622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 23 - 365
Target Start/End: Complemental strand, 9155582 - 9155235
Alignment:
| Q |
23 |
tgtcttggtaaggttaggtcaaaatactgagttgtttagttgatgattgctgtggacatgaaaagatgataacat--ttgtcatgaacaaagtgaatatt |
120 |
Q |
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| T |
9155582 |
tgtcatggtaatgttgggtcaaaatattgagttgtttaattgatgattgttgtggacatgaaaagaggattatgtgtttgtcatgaagaaagtgaattat |
9155483 |
T |
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| Q |
121 |
tgcatgtgggttgtaataggtcgattct---tttcttttttgttcatgtgtgatttgttgttgcattacataggagaagtacaagaacaggccttggctc |
217 |
Q |
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||| | |||||||||||||||| ||| | |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9155482 |
tgcctctgggttgtaataggtcaattttgtttttcttttttgttcatgtgtgatttggtgttgcattgcataggagaagtacaagaacaggccttggctc |
9155383 |
T |
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| Q |
218 |
ttggaagatgaaacaggtcagtcccaatttcagggtcatctagaaggttcacaatcagctacatattacctgcttatgaagggaaagaaggagtttattg |
317 |
Q |
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||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||||||||||| ||| |
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| T |
9155382 |
ttggaggatgaaacaggtcagtcccagtttcagggtcatcttgaaggttcacaatcagctacgtattacctgctaatgaaggaaaagaaggagtttgttg |
9155283 |
T |
|
| Q |
318 |
ccattcctgttggatcctggtatgcttgttaaggattgtgttcgtgga |
365 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||| ||||| |
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| T |
9155282 |
ccattcctgctggttcctggtatgcttgttaaggattgtgttagtgga |
9155235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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