View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14615_low_2 (Length: 294)

Name: NF14615_low_2
Description: NF14615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14615_low_2
NF14615_low_2
[»] chr2 (6 HSPs)
chr2 (201-247)||(11654503-11654549)
chr2 (201-247)||(11668268-11668314)
chr2 (1-43)||(11654288-11654330)
chr2 (1-43)||(11668053-11668095)
chr2 (88-122)||(11654384-11654418)
chr2 (88-122)||(11668149-11668183)


Alignment Details
Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 11654503 - 11654549
Alignment:
Q  201 taaaagcccttctacaccgaaaaacccaccaccctcatcgtctactc 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  11654503 taaaagcccttctacaccgaaaaacccaccaccctcatcgtctactc 11654549  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 11668268 - 11668314
Alignment:
Q  201 taaaagcccttctacaccgaaaaacccaccaccctcatcgtctactc 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  11668268 taaaagcccttctacaccgaaaaacccaccaccctcatcgtctactc 11668314  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 11654288 - 11654330
Alignment:
Q  1 ccttcacatgattaccctaccccttctactccccataacccac 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11654288 ccttcacatgattaccctaccccttctactccccataacccac 11654330  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 11668053 - 11668095
Alignment:
Q  1 ccttcacatgattaccctaccccttctactccccataacccac 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11668053 ccttcacatgattaccctaccccttctactccccataacccac 11668095  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 122
Target Start/End: Original strand, 11654384 - 11654418
Alignment:
Q  88 cctaatagctcttctccaccacataaccaacataa 122  Q
    |||||||||||||||||||||||||||||||||||    
T  11654384 cctaatagctcttctccaccacataaccaacataa 11654418  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 122
Target Start/End: Original strand, 11668149 - 11668183
Alignment:
Q  88 cctaatagctcttctccaccacataaccaacataa 122  Q
    |||||||||||||||||||||||||||||||||||    
T  11668149 cctaatagctcttctccaccacataaccaacataa 11668183  T

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