View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14616_high_11 (Length: 441)
Name: NF14616_high_11
Description: NF14616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14616_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 40 - 425
Target Start/End: Complemental strand, 3897007 - 3896621
Alignment:
| Q |
40 |
ctttatgaatataaaatcactttttgatttctccaacttgagtcataaatgtgatgcctctcaaatggttcggcacatctaggtagtgctagtccttctc |
139 |
Q |
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| T |
3897007 |
ctttatgaatataaaatcactttttgatttctccaacttgagtcataaatgtgatgcctctcaaatggttcggcacatctaggtagtgctagtccttctc |
3896908 |
T |
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| Q |
140 |
ttagatgcaaccctagttcgtacacaagtttggtttaccacacaactttaattgatcttgttaatactagtacactagaacctataattagttatgtata |
239 |
Q |
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| T |
3896907 |
ttagatgcaaccctagttcgtacacaagtttggtttaccacacaactttaattgatcttgttaatactagtac-ctagaacctataattagttatgtata |
3896809 |
T |
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| Q |
240 |
gttgaaatttgaaactctacaagccgttaatattaactnnnnnnnnnnnnnntaaattaatttacattctacaa--nnnnnnnatatagaaatagaaata |
337 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
3896808 |
gttgaaatttgaaactctacaagccgtcaatattaactaaaaaaataaaaaataaattaatttacattctacaatttttttttatatagaaatagaaata |
3896709 |
T |
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| Q |
338 |
tttacacatgcacactatcatctacgactataaccagttccgtaacaaattattagttctaaaacttactaattgattaatgaccata |
425 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3896708 |
tttacacatgcacactatcatctacgattataaccagttccgtaacaaattattagtcctaaaacttactaattgattaatgaccata |
3896621 |
T |
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