View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14616_high_12 (Length: 413)
Name: NF14616_high_12
Description: NF14616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14616_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 1779601 - 1779998
Alignment:
| Q |
1 |
ttgaattcatttgtagatacttgaatatgtaatgccggcaagaattagctattatctcaacatcatgctgaaaactctcaacaatcttggtcatggatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1779601 |
ttgaattcatttgtagatacttgaatatgtaatgccggtaagaattagctattatctcaacatcatgctgaaaactctcaacaatcttggtcatggatcc |
1779700 |
T |
|
| Q |
101 |
ggaagttacatttctcgactagtgtgtaattcttcttatggcaagcttgtcacaactagtctctccccaacagacgtatcttgtgacatccggggggttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1779701 |
ggaagttacatttctcgactagtgtgtaattcttcttatggcaagcttgtcacaactagtctctccccaacagacgtatcttgtgacatccggggggttt |
1779800 |
T |
|
| Q |
201 |
catctaacaacaacttgctcgttctcaatgtcttatattatgtccttacgctgttgagattttgattacttgcggggttcatgatgttcaagcaaagtct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1779801 |
catctaacaacaacttgctcgttctcaatgtcttatattatgtccttacgctgttgagattttgattacttgcggggttcatgatgttcaagcaaagtct |
1779900 |
T |
|
| Q |
301 |
cacggtattgacttcatgttagtagttgtagttgacaccttagcttcgttaataatatggaatatttggagaaaatctttcttgtaaaatgttaaatc |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1779901 |
cacggtattgacttcatgttagtagttgtagttgacaccttagcttcgttaataatatggaatatttggagaaaatctttcttgtaaaatgttaaatc |
1779998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University