View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14616_high_19 (Length: 316)

Name: NF14616_high_19
Description: NF14616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14616_high_19
NF14616_high_19
[»] chr1 (3 HSPs)
chr1 (52-145)||(50590242-50590335)
chr1 (150-252)||(50589807-50589909)
chr1 (150-244)||(19598093-19598188)
[»] chr2 (4 HSPs)
chr2 (52-145)||(16959021-16959114)
chr2 (174-221)||(16959470-16959517)
chr2 (175-249)||(22885894-22885968)
chr2 (194-248)||(27739348-27739402)
[»] chr4 (5 HSPs)
chr4 (198-244)||(28966393-28966439)
chr4 (175-250)||(12295595-12295670)
chr4 (183-252)||(46699334-46699403)
chr4 (208-252)||(8254531-8254575)
chr4 (208-252)||(8267949-8267993)
[»] chr5 (1 HSPs)
chr5 (198-252)||(27712604-27712658)


Alignment Details
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 50590335 - 50590242
Alignment:
Q  52 aataaactggttgtttgtgtgtctggtgcaacttggacgcaatattgttgtggtaccttaaaagtttctgtttcatctgcgtgatcttgagtcg 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50590335 aataaactggttgtttgtgtgtctggtgcaacttggacgcaatattgttgtggtaccttaaaagtttttgtttcatctgcgtgatcttgagtcg 50590242  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 50589909 - 50589807
Alignment:
Q  150 ttgtgagtatatccgctgtgattttttcttcaaaatgctatagtgatgttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttgc 249  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  50589909 ttgtgagtatatccactgtgattttttcttcgaaatgctatagtgatgttgctgctttccttgaagactatcaaccttgttgtcttgctcttgtgcttgc 50589810  T
Q  250 tga 252  Q
    |||    
T  50589809 tga 50589807  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 244
Target Start/End: Original strand, 19598093 - 19598188
Alignment:
Q  150 ttgtgagtatatccgctgtgattttttcttcaaaatgctatagtgatgtt-gctactttccttgaagactatcaacctcgttgtcttgctcttgtg 244  Q
    |||||||||||| |  |||| ||  ||||||| |||||||| |||||||| ||| ||||||||| ||||  | |||||||||||||||||||||||    
T  19598093 ttgtgagtatattctttgtggttgattcttcagaatgctatggtgatgtttgctgctttccttggagacattaaacctcgttgtcttgctcttgtg 19598188  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 16959021 - 16959114
Alignment:
Q  52 aataaactggttgtttgtgtgtctggtgcaacttggacgcaatattgttgtggtaccttaaaagtttctgtttcatctgcgtgatcttgagtcg 145  Q
    |||||| ||||||||||||||||| ||  ||||||||  |||||||||| | || |||||||| |||  ||||||||||| |||||||||||||    
T  16959021 aataaattggttgtttgtgtgtctcgtaaaacttggagacaatattgttattgttccttaaaaatttacgtttcatctgcatgatcttgagtcg 16959114  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 16959470 - 16959517
Alignment:
Q  174 tttcttcaaaatgctatagtgatgttgctactttccttgaagactatc 221  Q
    ||||||||||||||||| | ||||||| | ||||||||||||||||||    
T  16959470 tttcttcaaaatgctatggggatgttgttgctttccttgaagactatc 16959517  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 22885968 - 22885894
Alignment:
Q  175 ttcttcaaaatgctatagtgatgttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttgc 249  Q
    |||||| ||||||||  | |||||| || ||||||||  ||||| |||| || ||||||||||||||||||||||    
T  22885968 ttcttcgaaatgctaaggcgatgttcctgctttccttagagactttcaatcttgttgtcttgctcttgtgcttgc 22885894  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 27739348 - 27739402
Alignment:
Q  194 gatgttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttg 248  Q
    ||||||||| ||||||||| ||||| | | ||| |||||||||||||||||||||    
T  27739348 gatgttgctgctttccttggagactttaagccttgttgtcttgctcttgtgcttg 27739402  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 28966393 - 28966439
Alignment:
Q  198 ttgctactttccttgaagactatcaacctcgttgtcttgctcttgtg 244  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||    
T  28966393 ttgctactttccttggagactttcaacctcgttgtcttgctcttgtg 28966439  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 12295595 - 12295670
Alignment:
Q  175 ttcttcaaaatgctatagtgatgttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttgct 250  Q
    ||||||| |||||||| |||||||| || |||| |||| ||||| | | ||||| |||||||||||||||||||||    
T  12295595 ttcttcagaatgctatggtgatgttactgcttttcttggagacttttagcctcgctgtcttgctcttgtgcttgct 12295670  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 46699403 - 46699334
Alignment:
Q  183 aatgctatagtgatgttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttgctga 252  Q
    |||| ||| ||||||||||| ||||||||  ||||| ||| ||||| | |||||||||||||||||||||    
T  46699403 aatgttatggtgatgttgctgctttccttcgagactttcagcctcgctatcttgctcttgtgcttgctga 46699334  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 8254531 - 8254575
Alignment:
Q  208 ccttgaagactatcaacctcgttgtcttgctcttgtgcttgctga 252  Q
    ||||| |||||||||||||| ||||||||||||||| | ||||||    
T  8254531 ccttggagactatcaacctcattgtcttgctcttgttcctgctga 8254575  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 8267949 - 8267993
Alignment:
Q  208 ccttgaagactatcaacctcgttgtcttgctcttgtgcttgctga 252  Q
    ||||| |||||||||||||| ||||||||||||||| | ||||||    
T  8267949 ccttggagactatcaacctcattgtcttgctcttgttcctgctga 8267993  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 27712604 - 27712658
Alignment:
Q  198 ttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttgctga 252  Q
    ||||| ||||||||  ||||| ||||||||||||| |||||||||||| ||||||    
T  27712604 ttgcttctttccttagagactttcaacctcgttgtattgctcttgtgcctgctga 27712658  T

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