View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14616_high_2 (Length: 741)
Name: NF14616_high_2
Description: NF14616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14616_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 252 - 727
Target Start/End: Original strand, 8796870 - 8797318
Alignment:
| Q |
252 |
attcctcaacaatttaagaatgtctaagtaagtctttaacctaaaaatatttataatttggtcctaaatttggaaataatttagaatctttacttttaca |
351 |
Q |
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| T |
8796870 |
attcctcaacaatttaagaatgtttaagtaagtctttaacctaaaaatatttataatttggtcctaaatttggaaataatttagaatctttacttttaca |
8796969 |
T |
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| Q |
352 |
ccataatttagaacatatttaaaactctcaaatatagttcaaaatctacttttgtttttacaatagttcaaagatccacttaataatttgttttgacaaa |
451 |
Q |
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| T |
8796970 |
ccataatttagaacatatttaaaactctcaaa-----------atctacttttgtttttacaatagttcaaagatccacttaataatttgttttgacaaa |
8797058 |
T |
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| Q |
452 |
aaatttaccnnnnnnnattttaaggaaaaagatttacctaataattaaaccttgatattttcgaccttcgatctatataacaacgtacacataatcataa |
551 |
Q |
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| T |
8797059 |
aaatttacctttttt--ttttaaggaaaaagatttacct-------------tgatattttcgaccttcgatctatataacaacgtacacataatcataa |
8797143 |
T |
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| Q |
552 |
cataaaaaaccagacaatcaaccgacctttcacattgcggtttatgtttgcatgtgcattgctaatgtggtcccatgacacgcaaacctctgccttcctt |
651 |
Q |
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| T |
8797144 |
cataaaaaaccagacaatcaaccgacctttcacattgcggtttatgtttgcatgtgcattgctaatgtggtcccatgacacgtaaacctctgccttcctt |
8797243 |
T |
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| Q |
652 |
atgggcttatatggaccttgaccccacaaacccacatggtcccgcttcaaatctctatatattcacttccttcatc |
727 |
Q |
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| T |
8797244 |
atgggc-tatatggaccttgaacccacaaacccacatggtcccgcttcaaatctctatatattcacttccttcatc |
8797318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 8796678 - 8796882
Alignment:
| Q |
19 |
tcagcactatagttgattcctcccaaaaatacttcattcatctttaatatttaattattgtcatatgcactataatattcttatttataaaaataaaata |
118 |
Q |
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| T |
8796678 |
tcagcactatagttgattcctcccaaaaatacttcattcatctttaatatttaattattgtcatatgcactataatattcttatttataaaaataaaata |
8796777 |
T |
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| Q |
119 |
ataccactat--nnnnnnnncattaacaataatattaaataggtttaattactctctattatttttgagtaccaaagtttattactcttttgattcctca |
216 |
Q |
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| T |
8796778 |
atacccctataaaaaaaaaacattaacaataatattaaataggtttaattactctttattatttttgggtaccaaagtttattactcttttgattcctca |
8796877 |
T |
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| Q |
217 |
acaat |
221 |
Q |
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| T |
8796878 |
acaat |
8796882 |
T |
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