View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14616_high_21 (Length: 289)
Name: NF14616_high_21
Description: NF14616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14616_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 16829999 - 16830264
Alignment:
| Q |
18 |
atcacattataatcccttatgcaagaaaagttacaaaatcagaagcaggaataactcatctccaaagaattggaattggactaatactctctatagttgc |
117 |
Q |
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| T |
16829999 |
atcacattataatcccttatgcaagaaaagttacaaaatcagaagcaggaataactcatctccaaagaattggaattgggctaatactctctatagttgc |
16830098 |
T |
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| Q |
118 |
aatggctatagctgcaattgttgaaatcaaaagacaaaaaatagcatcacattcaaatgaaaagaatccattacctatttcatttctttggataggtttt |
217 |
Q |
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| T |
16830099 |
aatggctatagctgcaattgttgaaatcaaaagacaaaaaatagcatcacactcaaatgaaaaaaatccattacctatttcatttctttggataggtttt |
16830198 |
T |
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| Q |
218 |
cagtatttatttcttggttcagctgatcttttcacattggctggattactggaatttttcttctca |
283 |
Q |
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| T |
16830199 |
cagtatttatttcttggttcagctgatcttttcacattggctggattactggaatttttcttctca |
16830264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 25170351 - 25170286
Alignment:
| Q |
215 |
tttcagtatttatttcttggttcagctgatcttttcacattggctggattactggaatttttcttc |
280 |
Q |
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| T |
25170351 |
tttcagtacttgtttcttggttcagctgatcttttcactatggctggtttgttggaatttttcttc |
25170286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 25170541 - 25170455
Alignment:
| Q |
37 |
tgcaagaaaagttacaaaatcagaagcaggaataactcatctccaaagaattggaattggactaatactctctatagttgcaatggc |
123 |
Q |
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| T |
25170541 |
tgcaagaaaatacacaaaatcagaaatgggaataacacatcttcaaagaattggaattggattagtcctatctataattgcaatggc |
25170455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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