View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14616_high_22 (Length: 283)
Name: NF14616_high_22
Description: NF14616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14616_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 9 - 268
Target Start/End: Complemental strand, 33078584 - 33078325
Alignment:
| Q |
9 |
aatatgaaaaatcttttgttatttcctcctcatctcttgacaaagttttctttccagaaaacaaaaatgaaaaactgaactaaagcaggtaagaaaactc |
108 |
Q |
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| T |
33078584 |
aatatgaaaaatcttttgttatttcctcctcatctcttgacaaagttttctttccagaaaacaaaaatgaaaaactgaactaaagcaggtaagaaaactc |
33078485 |
T |
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| Q |
109 |
attttgttttgactaggtaaacatgattgcagaatacagaatgcctgctgtatgtatgtattatctgaaattctgatttccatgaaatcatatatagcca |
208 |
Q |
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| T |
33078484 |
attttgttttgactaggtaaacatgattgcagaatacagaatgcctgctgtatgtatgtattatctgaaattctgatttccatgaaatcatatatagcca |
33078385 |
T |
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| Q |
209 |
attacttgaagagccagtagctggattttccttaaaatcttgaggaaactagcaatattt |
268 |
Q |
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| T |
33078384 |
attacttgaagagccagtagctggattttccttaaaatcttgaggaaactagcaatattt |
33078325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 41502215 - 41502132
Alignment:
| Q |
25 |
tgttatttcctcctcatctcttgacaaagttttctttccagaaaacaaaaatgaaaaactgaactaaagcaggtaagaaaactcat |
110 |
Q |
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| T |
41502215 |
tgttatttcttcctcgtcccttgaccaagttttctttccaagaaa-aaatatgaaaaa-tgaacaaaagcaggtaagaaaactcat |
41502132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 41467960 - 41467906
Alignment:
| Q |
29 |
atttcctcctcatctcttgacaaagttttctttccagaaaacaaaaatgaaaaac |
83 |
Q |
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| T |
41467960 |
atttcttcctcatcccttgaggaagttttctttccaaaaaacaaaaatgaaaaac |
41467906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 41498157 - 41498092
Alignment:
| Q |
70 |
caaaaatgaaaaactgaactaaagcaggtaagaaaactcatttt-gttttgactaggtaaacatgat |
135 |
Q |
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| T |
41498157 |
caaaaatgaaaaac-gaacaaaagcaggtaagaaaactcattttggtttttcttaggtaaacatgat |
41498092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 41507441 - 41507367
Alignment:
| Q |
37 |
ctcatctcttgacaaagttttctttccagaaaacaaaaatgaaaaactgaactaaagcaggtaagaaaactcatttt |
113 |
Q |
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| T |
41507441 |
ctcatcccttgaccaagttttctttccatgaaa-aaaaatgaaata-tgaacaaaagcagttaagaaaactcatttt |
41507367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 41518361 - 41518293
Alignment:
| Q |
169 |
ttatctgaaattctgatttccatgaaatcatatatagccaattacttgaagagccagtagctggatttt |
237 |
Q |
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| T |
41518361 |
ttatctgtaattctgaatttgatgaaatcatatttattcaattacttgaagagctagtggctggatttt |
41518293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 41508241 - 41508187
Alignment:
| Q |
169 |
ttatctgaaattctgatttccatgaaatcatatatagccaattacttgaagagcc |
223 |
Q |
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| T |
41508241 |
ttatctgaaattctgaatttgatgaaatcatatttattcaattacttgaagagcc |
41508187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 41507319 - 41507263
Alignment:
| Q |
190 |
atgaaatcatatatagccaattacttgaagagccagtagctggattttccttaaaat |
246 |
Q |
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| T |
41507319 |
atgaaatcatatatagttaattagttgaagagccggtggttggattttccttgaaat |
41507263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 41518463 - 41518408
Alignment:
| Q |
54 |
ttttctttccagaaaacaaaaatgaaaaactgaactaaagcaggtaagaaaactcat |
110 |
Q |
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| T |
41518463 |
ttttctttccagaaaacaaaaatgataaa-tgaataaaatcaggtaaggaaactcat |
41518408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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