View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14616_high_32 (Length: 221)
Name: NF14616_high_32
Description: NF14616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14616_high_32 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 50590551 - 50590490
Alignment:
| Q |
22 |
attctttggtgttgttattccttttacggtggttgtggcgtgggtgcttgtacctcgtcgga |
83 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50590551 |
attctttggtgttgttattccttttacggtggttgtggcgtgggtgcttgtacctcgtcgga |
50590490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 16958851 - 16958900
Alignment:
| Q |
34 |
tgttattccttttacggtggttgtggcgtgggtgcttgtacctcgtcgga |
83 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||||||||||||||| |||| |
|
|
| T |
16958851 |
tgttcttccttttacggcggttgtggcatgggtgcttgtacctcgccgga |
16958900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 17078763 - 17078812
Alignment:
| Q |
34 |
tgttattccttttacggtggttgtggcgtgggtgcttgtacctcgtcgga |
83 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||||||||||||||| |||| |
|
|
| T |
17078763 |
tgttcttccttttacggcggttgtggcatgggtgcttgtacctcgccgga |
17078812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University