View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14616_high_5 (Length: 529)
Name: NF14616_high_5
Description: NF14616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14616_high_5 |
 | |
|
| [»] scaffold2079 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Original strand, 6346397 - 6346909
Alignment:
| Q |
1 |
attgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaatctgga |
100 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | |
|
|
| T |
6346397 |
attgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagttcttgatgtgaagctgta |
6346496 |
T |
|
| Q |
101 |
acgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaaagcaaacagaagtggtgatttctccatacttgcatttgttgttgcaaa |
200 |
Q |
| |
|
| |||| | |||||||||||||| | || ||||||||||||||||||| ||||| | ||||||||||||||| || ||||||| ||| ||||||||||| |
|
|
| T |
6346497 |
gcattgtcacaagcaccaaaaccaagtagtaaagagcaaccatgaaaaccaaagccatcagaagtggtgatttttcgatacttgtattcgttgttgcaaa |
6346596 |
T |
|
| Q |
201 |
cccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaagaaaatgtta |
300 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6346597 |
cccaattattgcgaacaatagctcaaaaaattggcttaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaataaaatgtta |
6346696 |
T |
|
| Q |
301 |
gcaatagtatatttaataacttcaaagtagaagagttacc-aataaaaaggagaaacatagcaagttaatgttttagtagtgaattatgagctgagaatt |
399 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6346697 |
gcaatagtatatttaataacttgaatgtagaagagttaccaaataaaaaagagaaacatagcaagttaatgttttagtagtgaattatgagctgagaatt |
6346796 |
T |
|
| Q |
400 |
gaacttattaaccttgttgaagttgaattgaacacggtcgcatttactgctgtagttccttgtgccattgttcctcttactgtgagctcaacactaactt |
499 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||| |||| | || ||| |||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
6346797 |
gaactaatttaccttgttgaagttgaattgaacacggttgcatatgatgttgtggttccttgtgccattgttcctcttactgtgagctcaacacaaattt |
6346896 |
T |
|
| Q |
500 |
cagtattgttatg |
512 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6346897 |
cagtattgttatg |
6346909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 6219713 - 6219562
Alignment:
| Q |
1 |
attgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaatctgga |
100 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6219713 |
attgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaatctgta |
6219614 |
T |
|
| Q |
101 |
acgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaa |
152 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6219613 |
acattgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaa |
6219562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 33 - 290
Target Start/End: Complemental strand, 6242845 - 6242588
Alignment:
| Q |
33 |
tgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaatctggaacgttgtaataagcaccaaaaccatgaagaaa |
132 |
Q |
| |
|
||||| ||||||||||||||||| ||| ||||||||| |||||||||| || |||||||||| ||| ||| |||| | |||||||||| | | | || || |
|
|
| T |
6242845 |
tgaaataacacttccaagtaaaagaattaccatcatgtatggaaggaaactattgatgtgaagctgtaacattgtcacaagcaccaaagctaggtagtaa |
6242746 |
T |
|
| Q |
133 |
agagcaaccatgaaaactaaagcaaacagaagtggtgatttctccatacttgcatttgttgttgcaaacccgattattgcaaacaatagctcaaaaaatt |
232 |
Q |
| |
|
||| || |||||| ||||| | || ||| | ||||| | | |||| ||| ||| ||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
6242745 |
agaaaaatagcgaaaaccaaagccatcatcagtagagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaatagcttgaaaaatt |
6242646 |
T |
|
| Q |
233 |
ggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaa |
290 |
Q |
| |
|
||||||||| || ||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
6242645 |
ggccaaataattctccaacttcattcaatctagaaagggttgaatgaattcaagaaaa |
6242588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 196 - 290
Target Start/End: Original strand, 6326013 - 6326107
Alignment:
| Q |
196 |
gcaaacccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaa |
290 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||| |||||| ||||| ||||| ||||||| |||||||| |||||||||||| |
|
|
| T |
6326013 |
gcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttcaatctagaaatggttgaatgaattcaagaaaa |
6326107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 6333490 - 6333599
Alignment:
| Q |
196 |
gcaaacccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaagaaaa |
295 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||| |||||| ||||| ||||| ||||||| |||||||| |||||||| |||| ||| |
|
|
| T |
6333490 |
gcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttcaatctagaaatggttgaatgaattcaag-aaagtaaa |
6333588 |
T |
|
| Q |
296 |
tgttagcaata |
306 |
Q |
| |
|
|||||| |||| |
|
|
| T |
6333589 |
tgttaggaata |
6333599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 6333280 - 6333434
Alignment:
| Q |
1 |
attgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaatctgga |
100 |
Q |
| |
|
|||||| ||||||| ||||||||||| | |||||||||||||||||||||||||| ||| | |||| || | |||| ||| ||||||||||||| || | |
|
|
| T |
6333280 |
attgtaggagaaattatcatcaaagctaaaactgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaagaaactcttgatgtgaaaatgca |
6333379 |
T |
|
| Q |
101 |
acgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaaagc |
155 |
Q |
| |
|
|| ||| | |||||||||| ||| | || |||||| |||||||||||||||||| |
|
|
| T |
6333380 |
acaatgtcacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagc |
6333434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 155
Target Start/End: Original strand, 6325835 - 6325957
Alignment:
| Q |
33 |
tgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaatctggaacgttgtaataagcaccaaaaccatgaagaaa |
132 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||| || | |||| ||| |||||||||||||| || | | |||| | |||||||||| ||| | || || |
|
|
| T |
6325835 |
tgaaacaacacttccaagtaaaagaatgatcatcttggaaggaatgaatctcttgatgtgaatatgtatcattgttacaagcaccaaagccaggtagtaa |
6325934 |
T |
|
| Q |
133 |
agagcaaccatgaaaactaaagc |
155 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
6325935 |
agagaaaccatgaaaactaaagc |
6325957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 6219457 - 6219395
Alignment:
| Q |
251 |
cttcattcaagctagaaagggttgaataaattcaagaaaagaaaatgttagcaatagtatatt |
313 |
Q |
| |
|
||||| ||||||||||||| ||||||| ||||||| || | ||||||||| ||||||||||| |
|
|
| T |
6219457 |
cttcagtcaagctagaaagagttgaatcaattcaaaaatatcaaatgttaggaatagtatatt |
6219395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 195 - 281
Target Start/End: Complemental strand, 909 - 823
Alignment:
| Q |
195 |
tgcaaacccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaat |
281 |
Q |
| |
|
||||||||||| |||||||||||| ||| |||||||||||||||| || ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
909 |
tgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattcaatctagaaagggttgaataaat |
823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 1053 - 992
Alignment:
| Q |
33 |
tgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaa |
94 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||| ||||| || |||||||||| |
|
|
| T |
1053 |
tgaaacaacacttccaagtaaaagaattaccatcatgaatgggaggaaactattgatgtgaa |
992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University