View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14616_high_9 (Length: 487)
Name: NF14616_high_9
Description: NF14616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14616_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 35383747 - 35384232
Alignment:
| Q |
1 |
gtttttacttttcttttcctctcttctcattctctccattatctctta----gcatgtgtgtgatcttgagggagactaattgcagttttgtcacaagtt |
96 |
Q |
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| T |
35383747 |
gtttttacttttcttttcttctcttctcattctctccattatctcttaattagcatgtgtgtgatcttgagggagactaattacagttttgtcacaagtt |
35383846 |
T |
|
| Q |
97 |
aaagggagctttttgttgtttataactcttataccctccaaagtatgagtaaggttatgaacaagttaagcattggttgatatcgttatctaggtaattg |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35383847 |
aaagggagctttttgttgtttataactcttataccctccaaagtatgagtaaggttatgaacaagttaagcattggttgatatcgttatctaggtaattg |
35383946 |
T |
|
| Q |
197 |
cacagctagggtattagcaaaggcctttaagtttaatgaccatgatgattcttgatctatagggctcaaatttaattcaaatagttcaatttatttgttc |
296 |
Q |
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| T |
35383947 |
cacagctagggtattagcaaaggcctttaagtttaatgaccatgatgattcttgatctatagggctcaaatttaattcaaatagctcaatttatttgttc |
35384046 |
T |
|
| Q |
297 |
actttgcaaaatgtactatgtttcataaacgttgcaataccattagcttatacaagattttatttaattcaatttattctctgttatatttgnnnnnnna |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35384047 |
cctttgcaaaatgtactatgtttcataaacgttgcaataccattagcttatacaagattttatttaattcaatttattctctgttatatttgttttttta |
35384146 |
T |
|
| Q |
397 |
ttggtggtaagtactatttttatttggtactttaagttgtgtaattgcagatacacccttcacattttaacatgcacttcttctca |
482 |
Q |
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| T |
35384147 |
ttggtggtaagtactatttttatttggtacgttaaattgtgtaattgcatatacaccctttacattttaacatgcacttcttctca |
35384232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 266 - 483
Target Start/End: Original strand, 35387865 - 35388079
Alignment:
| Q |
266 |
atttaattcaaatagttcaatttatttgttcactttgcaaaatgtactatgtttcataaacgttgcaataccattagcttatacaagattttatttaatt |
365 |
Q |
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||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
35387865 |
atttaattcaaatagctcaatttatttgtcccctttgcaaaatgtactatgtttcagaaatgttgcaatacctttagcttatacaagattttatttaatt |
35387964 |
T |
|
| Q |
366 |
caatttattctctgttatatttgnnnnnnnattggtggtaagtactatttttatttggtactttaagttgtgtaattgcagatacacccttcacatttta |
465 |
Q |
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| T |
35387965 |
caatttattccctgttatattt---tttttattggtggtaagtactatttttatttggtactttaagttgtgtaattgctgatacacccttcacatttga |
35388061 |
T |
|
| Q |
466 |
acatgcacttcttctcac |
483 |
Q |
| |
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||||||| |||||||||| |
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| T |
35388062 |
acatgcatttcttctcac |
35388079 |
T |
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Back To:
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