View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14616_low_11 (Length: 461)
Name: NF14616_low_11
Description: NF14616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14616_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 26961236 - 26961677
Alignment:
| Q |
1 |
ggtaaaatcaaatggttccacatatatcctctttgaataaattttctcattgaaaaatgataacaaaataattagagaattttaaaaacaatatttgtat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26961236 |
ggtaaaatcaaatggttccacatatatcctctttgaataaattctctcattgaaaaatgataacaaaataattagagaattttaaaaacaatatttgtat |
26961335 |
T |
|
| Q |
101 |
ctttatatatctaatcactttttgaaaatcaatgtagttgatctgcaccctttctcaacccatataaaggctgnnnnnnntaagtcggcattgatgcatg |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26961336 |
ctttatatatctaataactttttgaaaatcaatgtagttgatctgcaccctttctcaccccatataaaggctgaaaaaaataagtcggcattgatgcatg |
26961435 |
T |
|
| Q |
201 |
agaaagggtttctgtatgtaactgaagaataacatacagaatgatagttgcaaaagtttaataaaaatttgtttgaaactcacttttagattcttcatca |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26961436 |
agaaagggtttccgtatgtaactgaagaataacatacagaatgatagttgcaaaagtttaataaaaatttgtttgaaactcacttttagattcttcatca |
26961535 |
T |
|
| Q |
301 |
ctttcagcatcactaggaggctgacacttggctacttttctgactctagattttcctgaaacgtcacgacttgccaagtgcctcttcctttgaagctcct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26961536 |
ctttcagcatcactaggaggctgacacttggctacttttctgactctagattttcctgaaacgtcacgacttgccaagtgcctcttcctttgaagctcct |
26961635 |
T |
|
| Q |
401 |
ttacaccgtcgtctgctataatagagttaaaaatgaaaacta |
442 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26961636 |
tcacaccgtcgtctgctataatagagttaaaaatgaaaacta |
26961677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 249 - 410
Target Start/End: Original strand, 26850600 - 26850761
Alignment:
| Q |
249 |
tgcaaaagtttaataaaaatttgtttgaaactcacttttagattcttcatcactttcagcatcactaggaggctgacacttggctacttttctgactcta |
348 |
Q |
| |
|
||||||||||||||||||| | ||||| |||||||| |||||||||||||||||||| ||||||||| ||||| | ||| |||||||||||||||| | |
|
|
| T |
26850600 |
tgcaaaagtttaataaaaaaaagcttgaagctcactttcagattcttcatcactttcagaatcactaggcggctgccgcttagctacttttctgactcga |
26850699 |
T |
|
| Q |
349 |
gattttcctgaaacgtcacgacttgccaagtgcctcttcctttgaagctcctttacaccgtc |
410 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26850700 |
gattttcctgaaacatcaggacttgccaagtgcctcttcctttgaagctcctttactccgtc |
26850761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 26850148 - 26850240
Alignment:
| Q |
16 |
ttccacatatatcctctttgaataaattttctcattgaaaaatgataacaaaataa---ttagagaattttaaaaacaatatttgtatctttata |
107 |
Q |
| |
|
||||| |||||||||||| |||||||| |||||||| ||| |||||||||| || ||| |||||||||||||||||| || ||| |||||| |
|
|
| T |
26850148 |
ttccatatatatcctcttctaataaatt--ctcattgataaaggataacaaaaaaaaaattaaagaattttaaaaacaataattttatttttata |
26850240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 34667436 - 34667877
Alignment:
| Q |
1 |
ggtaaaatcaaatggttccacatatatcctctttgaataaattttctcattgaaaaatgataacaaaataattagagaattttaaaaacaatatttgtat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34667436 |
ggtaaaatcaaatggttccacatatatcctctttgaataaattctctcattgaaaaatgataacaaaataattagagaattttaaaaacaatatttgtat |
34667535 |
T |
|
| Q |
101 |
ctttatatatctaatcactttttgaaaatcaatgtagttgatctgcaccctttctcaacccatataaaggctgnnnnnnntaagtcggcattgatgcatg |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
34667536 |
ctttatatatctaataactttttgaaaatcaatgtagttgatctgcaccctttctcactccatataaaggctgaaaaaaataagtcggcattgatgcatg |
34667635 |
T |
|
| Q |
201 |
agaaagggtttctgtatgtaactgaagaataacatacagaatgatagttgcaaaagtttaataaaaatttgtttgaaactcacttttagattcttcatca |
300 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34667636 |
agaaagggtttccgtatgtaactgacgaataacatacagaatgatagttgcaaaagtttaataaaaatttgtttgaaactcacttttagattcttcatca |
34667735 |
T |
|
| Q |
301 |
ctttcagcatcactaggaggctgacacttggctacttttctgactctagattttcctgaaacgtcacgacttgccaagtgcctcttcctttgaagctcct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34667736 |
ctttcagcatcactaggaggctgacacttggctacttttttgactctagattttcctgaaacgtcacgacttgccaagtgcctcttcctttgaagctcct |
34667835 |
T |
|
| Q |
401 |
ttacaccgtcgtctgctataatagagttaaaaatgaaaacta |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34667836 |
ttacaccgtcgtctgctataatagagttaaaagtgaaaacta |
34667877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 420
Target Start/End: Original strand, 18465504 - 18465646
Alignment:
| Q |
278 |
actcacttttagattcttcatcactttcagcatcactaggaggctgacacttggctacttttctgactctagattttcctgaaacgtcacgacttgccaa |
377 |
Q |
| |
|
||||||||| ||||||||| || ||||| |||||||||||||||| |||||||| ||||||||| || |||| |||||| ||| || |||| | |
|
|
| T |
18465504 |
actcactttcagattcttcgtcgctttctacatcactaggaggctgcaacttggctgattttctgacccttccttttaatgaaacatcaggagttgcgga |
18465603 |
T |
|
| Q |
378 |
gtgcctcttcctttgaagctcctttacaccgtcgtctgctata |
420 |
Q |
| |
|
||||| ||||||||| |||||||| ||||| || ||| ||||| |
|
|
| T |
18465604 |
gtgccgcttcctttggagctccttaacaccatcctctcctata |
18465646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University