View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14616_low_12 (Length: 451)
Name: NF14616_low_12
Description: NF14616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14616_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 25880171 - 25880063
Alignment:
| Q |
13 |
cagagaggactttgcagatcgtacaattgttagcattgctcacagaatacctacagttatggattgtgacaaggttttggtcatagatgcaggtatgttt |
112 |
Q |
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| T |
25880171 |
cagagaggactttgcagatcgtacaattgttagcattgctcacagaatacctacagttatggattgtgacaaggttttggtcatagatgcaggtatgttt |
25880072 |
T |
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| Q |
113 |
atgttaatt |
121 |
Q |
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||||||||| |
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| T |
25880071 |
atgttaatt |
25880063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 186 - 353
Target Start/End: Complemental strand, 25879551 - 25879395
Alignment:
| Q |
186 |
aatgtaattacatatgtcaggttggtgtctggcacggacatgtatttaatctgaaatgtcggtagtggtttcatatattaataaaaagtttaataaagtg |
285 |
Q |
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| T |
25879551 |
aatgtaattacatatgttaggttggtttcccataccgacacgtctttaatctaaaatgttggtagt------acatattaataaaaagtttaataaagtg |
25879458 |
T |
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| Q |
286 |
gttccatcaaattcaaaattttgttaaaatttgttataattaaccacaaaaatggatttaaagtgaag |
353 |
Q |
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| T |
25879457 |
gttccatcaaattcaaaattttgttaatatttgtta----tgaccac-aaaatggatttaaagtgaag |
25879395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 25880049 - 25879994
Alignment:
| Q |
104 |
ggtatgtttatgttaattatgtatctatatgtgttcatgagaaaataacaataata |
159 |
Q |
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| T |
25880049 |
ggtatgtttttgttaattatgtatctctatgtgttcatgaaaaaataacaataata |
25879994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 422
Target Start/End: Complemental strand, 25879390 - 25879350
Alignment:
| Q |
383 |
atagtgttttctcaaa-gttttttatccttacaattattac |
422 |
Q |
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| T |
25879390 |
atagtgctttctcaaaagttttttatccttacaattattac |
25879350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 14313061 - 14312956
Alignment:
| Q |
13 |
cagagaggactttgcagatcgtacaattgttagcattgctcacagaatacctacagttatggattgtgacaaggttttggtcatagatgcaggtatgttt |
112 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
14313061 |
cagagaggattttgcagatcgtacaattattagcattgctcacagaataccaacagttatggattgtgacagggttttggtcatagatgcaggtatcttt |
14312962 |
T |
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| Q |
113 |
atgtta |
118 |
Q |
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|||||| |
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| T |
14312961 |
atgtta |
14312956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 14297030 - 14296928
Alignment:
| Q |
13 |
cagagaggactttgcagatcgtacaattgttagcattgctcacagaatacctacagttatggattgtgacaaggttttggtcatagatgcaggtatgttt |
112 |
Q |
| |
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|||||| |||||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14297030 |
cagagaagactttgcggatcgtacaatcattagcattgctcatagaataccaacagttatggattgtgacaaggttttggtcatagatgaaggtatgttt |
14296931 |
T |
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| Q |
113 |
atg |
115 |
Q |
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||| |
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| T |
14296930 |
atg |
14296928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 21 - 147
Target Start/End: Complemental strand, 14275102 - 14274980
Alignment:
| Q |
21 |
actttgcagatcgtacaattgttagcattgctcacagaatacctacagttatggattgtgacaaggttttggtcatagatgcaggtatgtttatgttaat |
120 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||| | ||||||||||||||||| ||||||||||||| | |
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| T |
14275102 |
actttgcagatcgtacaatcattagcattgctcacaggatacctacagttatggactgtgatagggttttggtcatagatgaaggtatgtttatg----t |
14275007 |
T |
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| Q |
121 |
tatgtatctatatgtgttcatgagaaa |
147 |
Q |
| |
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||| |||| |||||||||||||||||| |
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| T |
14275006 |
tatatatccatatgtgttcatgagaaa |
14274980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 14307377 - 14307256
Alignment:
| Q |
17 |
gaggactttgcagatcgtacaattgttagcattgctcacagaatacctacagttatggattgtgacaaggttttggtcatagatgcaggtatgtttatgt |
116 |
Q |
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||||| |||| ||||||||| |||||| ||||| ||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| |||||||||| |
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| T |
14307377 |
gaggattttgtagatcgtacggttgttaacattgttcacagaatacaaacagttatggactgtgacagggttttggtcatagatgcaggcatgtttatgt |
14307278 |
T |
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| Q |
117 |
taattatgtatctatatgtgtt |
138 |
Q |
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|| ||| ||| |||||||||| |
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| T |
14307277 |
tatatatctatttatatgtgtt |
14307256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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