View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14616_low_14 (Length: 427)

Name: NF14616_low_14
Description: NF14616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14616_low_14
NF14616_low_14
[»] chr2 (2 HSPs)
chr2 (15-198)||(39540863-39541046)
chr2 (260-418)||(39541098-39541256)
[»] chr4 (1 HSPs)
chr4 (15-49)||(30911732-30911766)


Alignment Details
Target: chr2 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 39540863 - 39541046
Alignment:
Q  15 aaagcatcatactccacaagtttatcatcatcagaaacnnnnnnnggtgccaatagtctcaactgagcatcaattgaagccatcttttcaatgttacgag 114  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39540863 aaagcatcatactccacaagtttatcatcatcagaaactttttttggtgccaatagtctcaactgagcatcaattgaagccatcttttcaatgttacgag 39540962  T
Q  115 tagccatattttctctctgaattgaaccactcacgttgatgaataaaatttgtgttactaactagagctagtagtagaaagttc 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39540963 tagccatattttctctctgaattgaaccactcacgttgatgaataaaatttgtgttactaactagagctagtagtagaaagttc 39541046  T

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Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 260 - 418
Target Start/End: Original strand, 39541098 - 39541256
Alignment:
Q  260 ctgtagagacgaaaatcttgtgacaacctaggtggaaaatctagttggttccaagttaataggatnnnnnnnnnnnnnnnnntatctaactgcacgggaa 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||    
T  39541098 ctgtagagacgaaaatcttgtgacaacctaggtggaaaatctagttggttccaagttaataggattgtgtgttgtgttgtgttatctaactgcacgggaa 39541197  T
Q  360 agtacaacaaagataaagtaacaaaacaaacaaacttgagtaactaactaacgcctttg 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39541198 agtacaacaaagataaagtaacaaaacaaacaaacttgagtaactaactaacgcctttg 39541256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 30911732 - 30911766
Alignment:
Q  15 aaagcatcatactccacaagtttatcatcatcaga 49  Q
    |||||||||||||||||||| ||||||||||||||    
T  30911732 aaagcatcatactccacaagcttatcatcatcaga 30911766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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