View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14616_low_17 (Length: 357)
Name: NF14616_low_17
Description: NF14616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14616_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 30622222 - 30622551
Alignment:
| Q |
18 |
caaactggctctggaaagacattcacaatctatggatcagaagacaacccgggtcttacacctcgtgcaattgctgaactttttagaattttaaggagag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30622222 |
caaactggctctggaaagacattcacaatctatggatcagaagacaaccccggtcttacacctcgtgcaattgctgaactttttagaattttaaggagag |
30622321 |
T |
|
| Q |
118 |
atagtaacaagtattccttttccttgaaggtaatatttctgaaatggataagaatcaaatttcatttctagtctcaagttgaaaattttcatgtcattag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30622322 |
atagtaacaagtattccttttccttgaaggtaatatttctgaaatggataagaatcaaatttcatttctagtctcaagttgaaaattttcatgtcattag |
30622421 |
T |
|
| Q |
218 |
atctagtggttatacttnnnnnnnttcaatcggtaaacgattaaagaatttaatttttagtctctaaattgtgtgattttcacaactaccaatcacaaga |
317 |
Q |
| |
|
||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30622422 |
atcaagtggttatacttaaaaaaattcaataggtaaacgattaaagaatttaatttttagtctctaaattgtgtgattttcacaactaccaatcacaaga |
30622521 |
T |
|
| Q |
318 |
gttaaataatactctgcttattatcctatg |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
30622522 |
gttaaataatactctgcttattatcctatg |
30622551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 10156586 - 10156455
Alignment:
| Q |
18 |
caaactggctctggaaagacattcacaatctatggatcagaagacaacccgggtcttacacctcgtgcaattgctgaactttttagaattttaaggagag |
117 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||||| ||| |||| || |||||||| || ||||| | | | || |||||||||||||||||||||| |
|
|
| T |
10156586 |
caaactggctctggaaagacgtttacaatatatggatccgaaaacaatcccggtcttacgccacgtgctactacagagctttttagaattttaaggagag |
10156487 |
T |
|
| Q |
118 |
atagtaacaagtattccttttccttgaaggta |
149 |
Q |
| |
|
|| ||||||||| ||| ||||||||||||||| |
|
|
| T |
10156486 |
atggtaacaagttttctttttccttgaaggta |
10156455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University