View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14616_low_18 (Length: 355)

Name: NF14616_low_18
Description: NF14616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14616_low_18
NF14616_low_18
[»] chr5 (5 HSPs)
chr5 (115-337)||(4175836-4176061)
chr5 (30-118)||(14591840-14591928)
chr5 (25-118)||(30917461-30917554)
chr5 (30-118)||(19828629-19828717)
chr5 (260-333)||(4171822-4171895)
[»] chr3 (2 HSPs)
chr3 (30-118)||(40396829-40396917)
chr3 (43-102)||(50232689-50232747)
[»] chr4 (3 HSPs)
chr4 (14-103)||(25871128-25871217)
chr4 (14-118)||(25506234-25506338)
chr4 (14-103)||(16748843-16748932)
[»] chr6 (1 HSPs)
chr6 (14-118)||(31121161-31121265)
[»] chr1 (1 HSPs)
chr1 (30-103)||(50052797-50052870)
[»] chr2 (1 HSPs)
chr2 (13-102)||(13007955-13008044)


Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 115 - 337
Target Start/End: Original strand, 4175836 - 4176061
Alignment:
Q  115 aattcctaagcaatgtagtgttttttggtgtaccggagcaaaaaccaataatgataaatgataaatatctaagataagagaccatcctatgcaatgcaca 214  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4175836 aattcctaagcaatgtagagttttttggtgtaccgtagcaaaaaccaataatgataaatgataaatatctaagataagagaccatcctatgcaatgcaca 4175935  T
Q  215 ccacatatattattgaccatatataattatatacctttcgtcctt---tttgaaatttaaagcacgtagttcttttccatcctcagatttcagcactatc 311  Q
    | ||||||||||||||||||||||||||||||||||| |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4175936 caacatatattattgaccatatataattatataccttccgtccttttctttgaaatttaaagcacgtagttcttttccatcctcagatttcagcactatc 4176035  T
Q  312 ctgtacagccgaatttatgaactgat 337  Q
    ||||||||||||||||||||||||||    
T  4176036 ctgtacagccgaatttatgaactgat 4176061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 14591928 - 14591840
Alignment:
Q  30 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 118  Q
    |||||||||||| |||||||||| ||| || ||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||    
T  14591928 aaaatgaatgaagggctaagatttattcagatgtcattaaaaggaatggatggctaagattatttcacaggagaaaacaggaggaaatt 14591840  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 30917461 - 30917554
Alignment:
Q  25 acattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 118  Q
    ||||||||||||||||| || |||||||||||||| ||| |||||||| |||||| ||||| |||||||||||| |||| || ||||| |||||    
T  30917461 acattaaaatgaatgaagggttaagattaattaagatgtcattaaaagaaatggacggctaagattatttcactcgagaaaataggagaaaatt 30917554  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 19828717 - 19828629
Alignment:
Q  30 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 118  Q
    |||||||||||| |||||| |||| ||||| ||||||||||| | ||||| ||||| ||||||||||| ||||| |||| |||||||||    
T  19828717 aaaatgaatgaagggctaaaattagttaagatgttattaaaatggatggacggctaagattatttcacaggagaaaacatgaggaaatt 19828629  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 4171822 - 4171895
Alignment:
Q  260 tttgaaatttaaagcacgtagttcttttccatcctcagatttcagcactatcctgtacagccgaatttatgaac 333  Q
    ||||||||| || |||||||||||| ||||||||||||| |||| ||| |||||||||||| ||  ||||||||    
T  4171822 tttgaaattgaaggcacgtagttctcttccatcctcagacttcaccaccatcctgtacagctgatattatgaac 4171895  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 40396829 - 40396917
Alignment:
Q  30 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 118  Q
    |||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||    
T  40396829 aaaatgaatgaaggactaagattaattaagatgtcattaaaaggaatggatggctaagattatttcacaggagaaaacaggagaaaatt 40396917  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 50232689 - 50232747
Alignment:
Q  43 ggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggag 102  Q
    ||||||||||||||||| ||| ||||||| |||||||||| || ||||||||||| ||||    
T  50232689 ggctaagattaattaagatgtcattaaaa-gaatggatggttaagattatttcacaggag 50232747  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 25871217 - 25871128
Alignment:
Q  14 atgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggaga 103  Q
    ||||||| |||||||| |||||||||||||||| |||||| ||||||||| ||||||||||||||| || || ||||||||||| |||||    
T  25871217 atgaaaatgacacattgaaatgaatgaaaggctgagattagttaaggtgtcattaaaaggaatggacggttaagattatttcacaggaga 25871128  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 25506338 - 25506234
Alignment:
Q  14 atgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggagg 113  Q
    ||||||| |||||||||||||||||||| |||| |||||||||||||| | |||||||| |||||| ||||| ||||  ||||| ||||| ||| |||||    
T  25506338 atgaaaatgacacattaaaatgaatgaagggctgagattaattaaggtttcattaaaagaaatggacggctaagattgattcacaggagaaaactggagg 25506239  T
Q  114 aaatt 118  Q
    |||||    
T  25506238 aaatt 25506234  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 16748932 - 16748843
Alignment:
Q  14 atgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggaga 103  Q
    ||||||| |||||||| ||||||||||||| || |||||| ||||||||| ||||||| ||||||| | ||| ||||||||||| |||||    
T  16748932 atgaaaatgacacattgaaatgaatgaaagactgagattagttaaggtgtcattaaaaagaatggacgactaagattatttcacaggaga 16748843  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 31121161 - 31121265
Alignment:
Q  14 atgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggagg 113  Q
    ||||||| |||||||||||||||||||| |||| |||||||||||||| | |||||||| |||||| ||||| ||||  ||||| ||||| ||| |||||    
T  31121161 atgaaaatgacacattaaaatgaatgaagggctgagattaattaaggtttcattaaaagaaatggacggctaagattgattcacaggagaaaactggagg 31121260  T
Q  114 aaatt 118  Q
    |||||    
T  31121261 aaatt 31121265  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 50052870 - 50052797
Alignment:
Q  30 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggaga 103  Q
    |||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||  ||||||||||| |||||    
T  50052870 aaaatgaatgaaggactaagattaattaagatgtcattaaaaggaatggatggctgagattatttcacaggaga 50052797  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 13007955 - 13008044
Alignment:
Q  13 gatgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggag 102  Q
    ||||| || ||||| |||||||||||||| ||||||||| | ||||||||| |||||||||||||||  || |  |||||||||||||||    
T  13007955 gatgacaatgacacgttaaaatgaatgaagggctaagatcagttaaggtgtcattaaaaggaatggacagccaaaattatttcactggag 13008044  T

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