View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14616_low_20 (Length: 336)
Name: NF14616_low_20
Description: NF14616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14616_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 12 - 318
Target Start/End: Original strand, 15545954 - 15546260
Alignment:
| Q |
12 |
ataatactataaaataaaattcactaattagcataaagagaaactcactattatggtcacagaatttgttacttcatcaagcatgatgttaccatattgt |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15545954 |
ataacactataaaataaaattcactaattagcataaagagaaactcactattatggtcacagaatttgttacttcatcaagcatgatgttaccatattgt |
15546053 |
T |
|
| Q |
112 |
aaatcattgtggcaaaaccctatgcgttgaggagttaccgacaattccttttccaaaagagaaatttctttgtccattgtgttcaaatgaaacatctcaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15546054 |
aaatcattgtggcaaaaccctatgcgttgaggagttatcgacaattccttttccaaaagagaaatttctttgtccattgtgttcaaatgaaacatctcaa |
15546153 |
T |
|
| Q |
212 |
cttcttcgggtgacaacaagcgcctcgcttcaataagccaatctctgaatcaataacataaaattttatagcaatggtcaaattgtgttcagatttgtca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15546154 |
cttcttcgggtgacaacaagcgcctcgcttcaataagccaatctctgagtcaataacataaaattttatagcaatggtcaaattgtgttcatatttgtca |
15546253 |
T |
|
| Q |
312 |
cacaaac |
318 |
Q |
| |
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||||||| |
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| T |
15546254 |
cacaaac |
15546260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 46 - 141
Target Start/End: Complemental strand, 3599647 - 3599552
Alignment:
| Q |
46 |
aaagagaaactcactattatggtcacagaatttgttacttcatcaagcatgatgttaccatattgtaaatcattgtggcaaaaccctatgcgttga |
141 |
Q |
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| T |
3599647 |
aaagagaaactcactattatggtcacagagttggtctcttcgtcaagcattatgttaccatattgcaaatcattgtggcaaaaccctatccgttga |
3599552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 14332518 - 14332569
Alignment:
| Q |
77 |
ttgttacttcatcaagcatgatgttaccatattgtaaatcattgtggcaaaa |
128 |
Q |
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||||| ||||||| | |||||||||||||||||||| ||||||||| ||||| |
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| T |
14332518 |
ttgtttcttcatccatcatgatgttaccatattgtagatcattgtgacaaaa |
14332569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 14425528 - 14425579
Alignment:
| Q |
77 |
ttgttacttcatcaagcatgatgttaccatattgtaaatcattgtggcaaaa |
128 |
Q |
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||||| ||||||| | |||||||||||||||||||| ||||||||| ||||| |
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| T |
14425528 |
ttgtttcttcatccatcatgatgttaccatattgtagatcattgtgacaaaa |
14425579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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