View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14616_low_24 (Length: 294)

Name: NF14616_low_24
Description: NF14616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14616_low_24
NF14616_low_24
[»] scaffold0003 (3 HSPs)
scaffold0003 (17-276)||(103412-103671)
scaffold0003 (17-176)||(88277-88436)
scaffold0003 (41-192)||(108298-108449)
[»] chr3 (1 HSPs)
chr3 (220-276)||(35177782-35177838)
[»] chr5 (3 HSPs)
chr5 (221-276)||(8221206-8221261)
chr5 (220-276)||(39558733-39558789)
chr5 (220-276)||(16667258-16667314)
[»] chr2 (2 HSPs)
chr2 (211-276)||(31452304-31452369)
chr2 (220-276)||(37993162-37993218)
[»] chr4 (1 HSPs)
chr4 (224-255)||(56299386-56299417)
[»] chr8 (1 HSPs)
chr8 (216-254)||(1576325-1576363)
[»] chr7 (2 HSPs)
chr7 (206-276)||(28770561-28770631)
chr7 (217-277)||(39320945-39321005)
[»] chr1 (2 HSPs)
chr1 (211-276)||(45640630-45640695)
chr1 (220-276)||(3982348-3982404)


Alignment Details
Target: scaffold0003 (Bit Score: 144; Significance: 9e-76; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 17 - 276
Target Start/End: Original strand, 103412 - 103671
Alignment:
Q  17 cataggtcgtggaattttttagtgaaaacttacggtcacattgcttaaacacagccacaagcgagacgaaagaattggggagcatactccaccataaaac 116  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||||||||||| |||||||||| ||    
T  103412 cataggtcgtggaattttttagtgaaaacttactgtcacattgctcaaacacagccacaagcaagacgaaagaactggggagcatattccaccataagac 103511  T
Q  117 aacctggtttataaggtaattcacacccatatgcttcacaatcagaatgttgtaagcagtcaataaactccgctgtaatnnnnnnnntggtataaattaa 216  Q
    || |||||||| |||||||||||||| ||||||||| ||||||||||||||| ||||||||  || |||||||||||||        |||||||||||||    
T  103512 aatctggtttaaaaggtaattcacacgcatatgcttgacaatcagaatgttgcaagcagtcggtatactccgctgtaataaaaaaaatggtataaattaa 103611  T
Q  217 tgagaaatgttaacgagtgtcttcggaacattctttaagcatttaaaatagtaaattttt 276  Q
    || ||||||||||  ||||| | | || || ||||||||||||||||||| |||||||||    
T  103612 tgggaaatgttaattagtgtttccagagcactctttaagcatttaaaataataaattttt 103671  T

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Target: scaffold0003; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 88277 - 88436
Alignment:
Q  17 cataggtcgtggaattttttagtgaaaacttacggtcacattgcttaaacacagccacaagcgagacgaaagaattggggagcatactccaccataaaac 116  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||  ||||  || ||||||||||| ||| |||||||||| ||    
T  88277 cataggtcgtggaattttttagtgaaaacttacggtcacatttctcaaacacagccacaacggagagcaacgaattggggagaatattccaccataagac 88376  T
Q  117 aacctggtttataaggtaattcacacccatatgcttcacaatcagaatgttgtaagcagt 176  Q
    || |||||||| | |||||||||||  ||||||||| |||||||||||||||||||||||    
T  88377 aatctggtttaaatggtaattcacattcatatgcttgacaatcagaatgttgtaagcagt 88436  T

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Target: scaffold0003; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 41 - 192
Target Start/End: Original strand, 108298 - 108449
Alignment:
Q  41 aaaacttacggtcacattgcttaaacacagccacaagcgagacgaaagaattggggagcatactccaccataaaacaacctggtttataaggtaattcac 140  Q
    ||||||||| ||||||||||| ||||||| | ||||| ||||||| |||| |||||| |||| |||| || || |||  ||||||||  |||||||| ||    
T  108298 aaaacttacagtcacattgctcaaacacaactacaagtgagacgatagaaatggggaacatattccagcagaatacactctggtttaagaggtaattgac 108397  T
Q  141 acccatatgcttcacaatcagaatgttgtaagcagtcaataaactccgctgt 192  Q
    || ||||||||| ||||||||||||| || ||||| || || ||||| ||||    
T  108398 acacatatgctttacaatcagaatgtagtgagcagacagtatactcctctgt 108449  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 35177782 - 35177838
Alignment:
Q  220 gaaatgttaacgagtgtcttcggaacattctttaagcatttaaaatagtaaattttt 276  Q
    ||||||||||||||||| |||| | ||||| ||||||| ||||||||||||||||||    
T  35177782 gaaatgttaacgagtgttttcgaagcattcgttaagcacttaaaatagtaaattttt 35177838  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 276
Target Start/End: Complemental strand, 8221261 - 8221206
Alignment:
Q  221 aaatgttaacgagtgtcttcggaacattctttaagcatttaaaatagtaaattttt 276  Q
    ||||||||| |||||||| |||| |||||||||||||||| ||||||||| |||||    
T  8221261 aaatgttaatgagtgtctccggagcattctttaagcattttaaatagtaagttttt 8221206  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 39558733 - 39558789
Alignment:
Q  220 gaaatgttaacgagtgtcttcggaacattctttaagcatttaaaatagtaaattttt 276  Q
    |||||||||||||||||||||||| || |  |||||||||| ||||||||| |||||    
T  39558733 gaaatgttaacgagtgtcttcggagcacttcttaagcattttaaatagtaagttttt 39558789  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 16667258 - 16667314
Alignment:
Q  220 gaaatgttaacgagtgtcttcggaacattctttaagcatttaaaatagtaaattttt 276  Q
    ||||||||||||||||||| | ||||| | |||||||| || ||||||||| |||||    
T  16667258 gaaatgttaacgagtgtctccagaacactttttaagcactttaaatagtaagttttt 16667314  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 31452304 - 31452369
Alignment:
Q  211 aattaatgagaaatgttaacgagtgtcttcggaacattctttaagcatttaaaatagtaaattttt 276  Q
    |||| |||||||||||||||||||||   ||||||||| |||||||| || ||||||||| |||||    
T  31452304 aatttatgagaaatgttaacgagtgttcccggaacattatttaagcactttaaatagtaagttttt 31452369  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 37993218 - 37993162
Alignment:
Q  220 gaaatgttaacgagtgtcttcggaacattctttaagcatttaaaatagtaaattttt 276  Q
    |||||||||| ||||||||  | | |||||||||| ||||| |||||||||||||||    
T  37993218 gaaatgttaaagagtgtctctgaagcattctttaaacattttaaatagtaaattttt 37993162  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 255
Target Start/End: Complemental strand, 56299417 - 56299386
Alignment:
Q  224 tgttaacgagtgtcttcggaacattctttaag 255  Q
    ||||||||||||||||||||||||||||||||    
T  56299417 tgttaacgagtgtcttcggaacattctttaag 56299386  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 254
Target Start/End: Original strand, 1576325 - 1576363
Alignment:
Q  216 atgagaaatgttaacgagtgtcttcggaacattctttaa 254  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  1576325 atgagaaatgttaacgagtgtttccggaacattctttaa 1576363  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 276
Target Start/End: Complemental strand, 28770631 - 28770561
Alignment:
Q  206 gtataaattaatgagaaatgttaacgagtgtcttcggaacattctttaagcatttaaaatagtaaattttt 276  Q
    ||||||| ||| | |||||||||||||||| || ||||||| |||||||||| |  ||||||||| |||||    
T  28770631 gtataaaataaagggaaatgttaacgagtgcctccggaacactctttaagcactctaaatagtaagttttt 28770561  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 39320945 - 39321005
Alignment:
Q  217 tgagaaatgttaacgagtgtcttcggaacattctttaagcatttaaaatagtaaatttttt 277  Q
    ||||||||||||||||||||||| |  ||| |||||||||| || || |||||| ||||||    
T  39320945 tgagaaatgttaacgagtgtctttgagacactctttaagcactttaattagtaagtttttt 39321005  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 45640695 - 45640630
Alignment:
Q  211 aattaatgagaaatgttaacgagtgtcttcggaacattctttaagcatttaaaatagtaaattttt 276  Q
    ||||| || ||||||||||||||||||  ||  ||| ||||||||||||| ||||||||| |||||    
T  45640695 aattattgggaaatgttaacgagtgtccccgagacactctttaagcattttaaatagtaagttttt 45640630  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 3982404 - 3982348
Alignment:
Q  220 gaaatgttaacgagtgtcttcggaacattctttaagcatttaaaatagtaaattttt 276  Q
    ||||||||||||||||||| |||  || ||||||| || || |||||||||||||||    
T  3982404 gaaatgttaacgagtgtctccggtgcactctttaaacactttaaatagtaaattttt 3982348  T

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