View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14616_low_29 (Length: 273)
Name: NF14616_low_29
Description: NF14616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14616_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 35147318 - 35147072
Alignment:
| Q |
20 |
ggcagaacatgtttgagaattttcaacctactatcttacacatatttttgttccaaactgtttcttcgtaatatatatatctaataggttttattacttg |
119 |
Q |
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| T |
35147318 |
ggcagaacatgtttgagaattttcaacctactatcttacacatatttttgttccaaactgtttcttcgtaatatatatatctaataggttttattacttg |
35147219 |
T |
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| Q |
120 |
tcaacatattgtgatgcaatacgaatttgctgccatttattgatttggaaccctcaactctgaacgttggagactgaattttattcgagtgatttaaatt |
219 |
Q |
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| T |
35147218 |
tcaacatattgtgatgcaatacgaatttgctgccatttattgatttggaaccctcaactctgaacgttggagactgaattttattcgagtgatttaaatt |
35147119 |
T |
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| Q |
220 |
ctggtctattttaggcatttgttctatgctctattttaatcaatatt |
266 |
Q |
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| T |
35147118 |
ctggtatattttaggcatttgttctatgctctattttaatcaatatt |
35147072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 128 - 243
Target Start/End: Complemental strand, 35190158 - 35190044
Alignment:
| Q |
128 |
ttgtgatgcaatacgaatttgctgccatttattgatttggaaccctcaactctgaacgttggagactgaattttattcgagtgatttaaattctggtcta |
227 |
Q |
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| T |
35190158 |
ttgtgatgcaatacgaattagctgccatttattgatttggaaccctcaactctgaacgctggggactgaa-tgtattccagtgatttaaattttggtata |
35190060 |
T |
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| Q |
228 |
ttttaggcatttgttc |
243 |
Q |
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| T |
35190059 |
tttacggcattggttc |
35190044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 35199714 - 35199600
Alignment:
| Q |
131 |
tgatgcaatacgaatttgctgccatttattgatttggaaccctcaactctgaacgttggagactgaattttattcgagtgatttaaattctggtctattt |
230 |
Q |
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| T |
35199714 |
tgatgcaatatgaatttgctgcaaattattgatttggaaccctcaactatgatcgttggggactgaa-tttattccagtgatttaaattctggtctgttt |
35199616 |
T |
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| Q |
231 |
taggcatttgttctat |
246 |
Q |
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| T |
35199615 |
aaggcattggttctat |
35199600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 166
Target Start/End: Complemental strand, 35207978 - 35207943
Alignment:
| Q |
131 |
tgatgcaatacgaatttgctgccatttattgatttg |
166 |
Q |
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| T |
35207978 |
tgatgcaatatgaatttgctgccatttattgatttg |
35207943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 35248039 - 35247990
Alignment:
| Q |
125 |
atattgtgatgcaatacgaatttgctgccatttattgatttggaaccctcaac |
177 |
Q |
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| T |
35248039 |
atattgtgatgcattatgaatttgct---atttattgatttggaaccctcaac |
35247990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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