View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14616_low_32 (Length: 249)
Name: NF14616_low_32
Description: NF14616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14616_low_32 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 81 - 233
Target Start/End: Complemental strand, 44911828 - 44911676
Alignment:
| Q |
81 |
ccatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaacctaatgagaattaatagaaacgagaagatggaagatagatgaat |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44911828 |
ccatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaacctaatgaaaattaatagaaacgagaagatggaagatagatgaat |
44911729 |
T |
|
| Q |
181 |
ggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctctgt |
233 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44911728 |
ggcatgaacggtaaattggatgttttatggtagttaaattcctgaccctctgt |
44911676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 71 - 234
Target Start/End: Original strand, 3768993 - 3769156
Alignment:
| Q |
71 |
ttgagacaatccatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaacctaatgagaattaatagaaacgagaagatggaag |
170 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
3768993 |
ttgacacaatccatgggaagaaggtatgaaacaagaggggttggtgttgctgtgatgacgatgaaccaaatgaaaattaatagaaacgagaagatggaag |
3769092 |
T |
|
| Q |
171 |
atagatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctctgtg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
3769093 |
atagatgaatggcatgaacggtaaattggaggttctatggtagttaaattcctgaccccctgtg |
3769156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 3768575 - 3768615
Alignment:
| Q |
32 |
aaagaaacaaccagcaaagagttttgttgcaaatgcttgtt |
72 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3768575 |
aaagaaacaaccagcaaagagttttgttgcaaatgcttgtt |
3768615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 71 - 234
Target Start/End: Complemental strand, 3928724 - 3928561
Alignment:
| Q |
71 |
ttgagacaatccatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaacctaatgagaattaatagaaacgagaagatggaag |
170 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
3928724 |
ttgacacaatctatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaaccgaatgaaaattaatagaaacgagaagatggaag |
3928625 |
T |
|
| Q |
171 |
atagatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctctgtg |
234 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3928624 |
atagatgaatgacatgaacggtaaattgaaggttctatggtagttaaattcctgaccctctgtg |
3928561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 71 - 231
Target Start/End: Complemental strand, 6354074 - 6353914
Alignment:
| Q |
71 |
ttgagacaatccatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaacctaatgagaattaatagaaacgagaagatggaag |
170 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
6354074 |
ttgacacaatccatgggaagaaggtatgaaacaagatgggttggtgttgttgtgatgacgatgaaccgaatgaaaattaatagaaacgagaagatggaag |
6353975 |
T |
|
| Q |
171 |
atagatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctct |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||| |
|
|
| T |
6353974 |
atagatgaatggcatgaacggtaaattggaggttctatggtagtttaattcatgaccctct |
6353914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 6354504 - 6354454
Alignment:
| Q |
23 |
cccactatcaaa-gaaacaaccagcaaagagttttgttgcaaatgcttgtt |
72 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6354504 |
cccactatcaaaagaaacaaccagcaaagagttttgttgcaaatgcttgtt |
6354454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 30372845 - 30372929
Alignment:
| Q |
145 |
aattaatagaaacgagaagatggaagatagatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccct |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
30372845 |
aattaatagaaacgagaagatggaagatagatgaatgacatgaacggtaaattggaggatctatggtagttaaattcctgaccct |
30372929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University