View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14616_low_4 (Length: 576)
Name: NF14616_low_4
Description: NF14616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14616_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 524; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 11 - 558
Target Start/End: Complemental strand, 3080695 - 3080148
Alignment:
| Q |
11 |
gagatgaagcaatgaaatcaattattgttgagtcgaaaattcgtgcaaatttcccaattcatggatgtcttggtgttattcatatgtatgcaggtatgat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3080695 |
gagatgaagcaatgaaatcaattattgttgagtcgaaaattcgtgcaaatttcccaattcatggatgtcttggtgttattcatatgtatgcaggtatgat |
3080596 |
T |
|
| Q |
111 |
aaataagtcttctaaagagttagatcaattaaaatggctattagcttattgtaagcaaaacaaccatttacaacaacaaaatctttatttctccatagct |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
3080595 |
aaataagtcttctaaagagttagatcaattaaaatggctattagcttattgtaagcaaaacaaccatttacaacaacaaaatctttattcctccatacct |
3080496 |
T |
|
| Q |
211 |
tctactagttttcaagtgtttaataattatggtgatgttggtaattattatcacaatagtgaaaataatatgatgataccatcttcttcttatgttagtc |
310 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3080495 |
tctactagttttcaagtgtttaacaattatggtgatgttggtaattattatcaaaatagtgaaaataatatgatgataccatcttcttcttatgttagtc |
3080396 |
T |
|
| Q |
311 |
aaaccacccctcatgatgttaataattctccaattgatacaaacttgaatataaattctatggatacaaggggtgcaaaattgagtggtgatagcaacct |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3080395 |
aaaccacccctcatgatgttaataattctccaattgatacaaacttgaatataaattctatggatacaaggggtgcaaaattgagtggtgatagcaacct |
3080296 |
T |
|
| Q |
411 |
tgatggggacaatgtcaaattagaattggacaataatgaagatttggacgactttgatatacaaattagaacaatatttgattgggaggaaacagaagga |
510 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3080295 |
tggtggggacaatgtcaaattagaattggacaataatgaagatttggacgactttgatatacaaattagaacaatatttgattgggaggaaacagaagga |
3080196 |
T |
|
| Q |
511 |
tttttagatactgatgaattacctagttcggattttaatatagatatg |
558 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3080195 |
ttgttagatactgatgaattacctagttcggattttaatatagatatg |
3080148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 325058 - 324980
Alignment:
| Q |
12 |
agatgaagcaatgaaatcaattattgttgagtcgaaaattcgtgcaaatttcccaattcatggatgtcttggtgttatt |
90 |
Q |
| |
|
||||||||||||||| || |||||| ||||||| |||| ||||||| | ||||| |||||||||||||||| ||||| |
|
|
| T |
325058 |
agatgaagcaatgaagtcgattatttttgagtcagaaatgcgtgcaagatacccaagtcatggatgtcttggtcttatt |
324980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 3104414 - 3104488
Alignment:
| Q |
19 |
gcaatgaaatcaattattgttgagtcgaaaattcgtgcaaatttcccaattcatggatgtcttggtgttattcat |
93 |
Q |
| |
|
|||||| | ||||||||| |||||||| | ||||||||| | ||||| ||||||||||| |||||||||||||| |
|
|
| T |
3104414 |
gcaatggattcaattatttttgagtcggatattcgtgcagaattccccgttcatggatgtgttggtgttattcat |
3104488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 324589 - 324528
Alignment:
| Q |
318 |
ccctcatgatgttaataattctccaattgatacaaacttgaatataaattctatggatacaa |
379 |
Q |
| |
|
||||||||||||||| || | |||| ||||||||| | ||||||||||| ||||||||||| |
|
|
| T |
324589 |
ccctcatgatgttaacaaatttccatctgatacaaattcgaatataaattttatggatacaa |
324528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 137
Target Start/End: Original strand, 41122107 - 41122232
Alignment:
| Q |
12 |
agatgaagcaatgaaatcaattattgttgagtcgaaaattcgtgcaaatttcccaattcatggatgtcttggtgttattcatatgtatgcaggtatgata |
111 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | || ||||||| ||||| | ||||||||| ||||||||||||||||| | ||| ||| || |
|
|
| T |
41122107 |
agatgaagcaatgaaatcaattatctttgagtcggatatgcgtgcaagattccctgctactggatgtctcggtgttattcatatgtacggaggcatgtta |
41122206 |
T |
|
| Q |
112 |
aataagtcttctaaagagttagatca |
137 |
Q |
| |
|
|| |||||| | | ||||||||||| |
|
|
| T |
41122207 |
aagaagtctgttgatgagttagatca |
41122232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 36915192 - 36915244
Alignment:
| Q |
38 |
ttgagtcgaaaattcgtgcaaatttcccaattcatggatgtcttggtgttatt |
90 |
Q |
| |
|
|||||||| | ||||||||||| || || ||||||||||||||||||||||| |
|
|
| T |
36915192 |
ttgagtcggatattcgtgcaaaatttcccgttcatggatgtcttggtgttatt |
36915244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University