View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14616_low_40 (Length: 209)
Name: NF14616_low_40
Description: NF14616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14616_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 2 - 190
Target Start/End: Complemental strand, 4329188 - 4329004
Alignment:
| Q |
2 |
catttttattctattcatcgcgatggctaagggtattccctgcagaacttaaaacaatcaatcattctttagatagccgtaatatgcacacacaatctgg |
101 |
Q |
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| T |
4329188 |
catttttattctattcatcgcgatggctaagggtattccctacagaacttaaaacaatca----ttctttagatagccgtaatatgcacacacaatctgg |
4329093 |
T |
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| Q |
102 |
aaattgtgaaaaaagnnnnnnnatagattagaataaagtataaatttaagctactgtcgtgaattctacgtttgatgtattgtggcttg |
190 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4329092 |
aaattgtgaaaaaagtttttttatagattagaataaagtataaatttaagctactgtcgtgaattctacgtttgatgtattgtgacttg |
4329004 |
T |
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