View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14616_low_8 (Length: 505)
Name: NF14616_low_8
Description: NF14616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14616_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Complemental strand, 13322904 - 13322427
Alignment:
| Q |
1 |
caactccataactttaattcatttcacttgtataatccattaataagtaaattaatacacgtgaaaatagacaaacacaaatcattcttatcaattttac |
100 |
Q |
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| T |
13322904 |
caactccataactttaattcatttcacttgtataatccattaataagtaaattaatacacgtgaaaatagacaaacacaaatcattcttatcaattttac |
13322805 |
T |
|
| Q |
101 |
tatgacctaaatattagaccaataaagcatgccccatataatcaaaacaaggctcattagaacatggcttgtagctttcacagcttggttttcttcagcc |
200 |
Q |
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| T |
13322804 |
tatgacctaaatattagaccaacaaagcatgccccatataatgaaaacaaggctcattagaacatggcttgtagctttcacagcttggttttcttcagcc |
13322705 |
T |
|
| Q |
201 |
tggatgtgctcagccacattaaagtttcctacacgaaacgattttacatttgtcagtaactatgtgaatgtcgtgtcaatgtcgtgttcggtgtctgctt |
300 |
Q |
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| T |
13322704 |
tggatgtgctcagccacattaaagtttcctacacgaaacaaatat-------------attatgtgagtttagtgtcaatgtcgtgttcggtatctactt |
13322618 |
T |
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| Q |
301 |
ttgtacttcataagtcggtagatcacagaatatactaatctttatggtttattctcaaattataatatgcaattaaaacatggtaatcacctctttcagg |
400 |
Q |
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| T |
13322617 |
tgatgcttcataagtcggtagatcacaaaacatattaatctttatggtttgttctcaaattataatatgcaattaaaacatggtaatcacctctttcagg |
13322518 |
T |
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| Q |
401 |
gccataaccacatccagctagaattgtttctttgacatcctctagggttgctctattgtagaatatgaagtggctgaaaatgttatcaatg |
491 |
Q |
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| T |
13322517 |
gccataaccacatccagctagaattgtttctttgacatcctctagggttgctctattgtagaatatgaagtggctgaaaatgttatcaatg |
13322427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 13326539 - 13326465
Alignment:
| Q |
29 |
tgtataatccattaataagtaaattaatacacgtgaaaatagacaaacacaaatcattcttatcaattttactatg |
104 |
Q |
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||||||||| ||| |||||||||||||||||| ||||||||| |||||||| ||||| ||||||||||||||||| |
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| T |
13326539 |
tgtataatc-attgataagtaaattaatacacatgaaaatagcgaaacacaattcattattatcaattttactatg |
13326465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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