View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14616_low_9 (Length: 497)
Name: NF14616_low_9
Description: NF14616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14616_low_9 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 9019294 - 9018795
Alignment:
| Q |
1 |
tctatcatatcattttgaaaaactgaaatccttggattctaacattattagtcatttcatgacttaggcacactacacaatatactcataaatgtgatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9019294 |
tctatcatatcattttgaaaaactgaaatccttggattctaacattattagtcatttcatgacttaggcacactacacaatatactcataaatgtgatgc |
9019195 |
T |
|
| Q |
101 |
tatcatttaccgtgtcttgtgcattttttattttaacatctaataaacagttgcctaagtagaagaacgaggtgcagcaccctcactgccacttgagtct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9019194 |
tatcatttaccgtgtcttgtgcattttttattttaacatctaataaacagttgcctaagtagaagaacgaggtgcagcaccctcactgccacttgagtct |
9019095 |
T |
|
| Q |
201 |
tgaggtcaaattcatatgtatagttgcaactaatcctttgttattcttgtgattctttttcatagcacttaattcttcttctttctttataa------tt |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||| ||| | |
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| T |
9019094 |
tgaggtcaaattcatatgtatagttgcaactaatccttttttaatcttgtgattctttttcatagcactcaattcttcttctttctttttaagctctcct |
9018995 |
T |
|
| Q |
295 |
tctaactaagatatatacatc---atattttccttcttcactagttctcggtaattaatatctgtggagcttaattgttttgaaaccatatccatgacgt |
391 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| || |||||| |||||||||||||||| || ||||||||||||||||||||||||| ||| |
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|
| T |
9018994 |
tctaactaagatatatgtatctttatattttccttcttcccttgttctctgtaattaatatctgtgcagattaattgttttgaaaccatatccataacg- |
9018896 |
T |
|
| Q |
392 |
agaagatgtgagaaattagtaatgaactgtgagaacaggaaatgtagtttgcgaaaatgaagagagttttgaaataagggagagaactccaacactgttt |
491 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
9018895 |
agaagatgtgagaaacgagtaatgaactgtgagaacagaaaatgcaatttgcgaaaatgaagagagttttgaaataaaggagagaactccaacactgttt |
9018796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 9028696 - 9028197
Alignment:
| Q |
1 |
tctatcatatcattttgaaaaactgaaatccttggattctaacattattagtcatttcatgacttaggcacactacacaatatactcataaatgtgatgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9028696 |
tctatcatatcattttgaaaaactgaaatccttcgattctaacattattagtcatttcatgacttaggcacactacacaatatactcataaatgtgatgc |
9028597 |
T |
|
| Q |
101 |
tatcatttaccgtgtcttgtgcattttttattttaacatctaataaacagttgcctaagtagaagaacgaggtgcagcaccctcactgccacttgagtct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9028596 |
tatcatttaccgtgtcttgtgcattttttattttaacatctaataaacagttgcctaagtagaagaacgaggtgcagcaccctcactgccacttgagtct |
9028497 |
T |
|
| Q |
201 |
tgaggtcaaattcatatgtatagttgcaactaatcctttgttattcttgtgattctttttcatagcacttaattcttcttctttctttataa------tt |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||| ||| | |
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|
| T |
9028496 |
tgaggtcaaattcatatgtatagttgcaactaatccttttttaatcttgtgattctttttcatagcactcaattcttcttctttctttttaagctctcct |
9028397 |
T |
|
| Q |
295 |
tctaactaagatatatacatc---atattttccttcttcactagttctcggtaattaatatctgtggagcttaattgttttgaaaccatatccatgacgt |
391 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| || |||||| |||||||||||||||| || ||||||||||||||||||||||||| ||| |
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|
| T |
9028396 |
tctaactaagatatatgtatctttatattttccttcttcccttgttctctgtaattaatatctgtgcagattaattgttttgaaaccatatccataacg- |
9028298 |
T |
|
| Q |
392 |
agaagatgtgagaaattagtaatgaactgtgagaacaggaaatgtagtttgcgaaaatgaagagagttttgaaataagggagagaactccaacactgttt |
491 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
9028297 |
agaagatgtgagaaacgagtaatgaactgtgagaacagaaaatgcaatttgcgaaaatgaagagagttttgaaataaaggagagaactccaacactgttt |
9028198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 146 - 492
Target Start/End: Complemental strand, 8993869 - 8993515
Alignment:
| Q |
146 |
aacagttgcctaagtagaagaacgaggtgcagcaccctcactgccacttgagtcttgaggtcaaattcatatgtatagttgcaactaatcctttgttatt |
245 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
8993869 |
aacagttgcctaagtagaagaacgaggtggagcaccctcacttccatttgagtcttgaggtcaaattcatatgcatagttgcaactaatcctttgttaat |
8993770 |
T |
|
| Q |
246 |
cttgtgattctttttcatagcacttaattcttcttctttctttataat------ttctaactaagatatat---acatcatattttccttcttcactagt |
336 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||| | | ||||||||||||||||| | ||||||||||||| ||| || || |
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|
| T |
8993769 |
attgtgattctttttcatagaactcaattcttcttctttctttttcagctctccttctaactaagatatatgtatcttcatattttccttattcgcttgt |
8993670 |
T |
|
| Q |
337 |
tctcggtaattaatatctgtggagcttaattgttttgaaaccatatccatgacgtagaagatgtgagaaattagtaatgaactgtgagaacaggaaatgt |
436 |
Q |
| |
|
||| |||||||||||||||| || ||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
8993669 |
tctttgtaattaatatctgtgcagattaattgttttgaaaccatatccataac-aagaagatgtgagaaaaaagtaatgaactgtgagaacagaaaatgc |
8993571 |
T |
|
| Q |
437 |
agtttgcgaaaatgaagagagttttgaaataagggagagaactccaacactgtttt |
492 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8993570 |
aatttgcgaaaatgaagagagttttgaaataagggagagaactccaacactgtttt |
8993515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 144 - 492
Target Start/End: Complemental strand, 9014616 - 9014267
Alignment:
| Q |
144 |
taaacagttgcctaagtagaagaacgaggtgcagcaccctcactgccacttgagtcttgaggtcaaattcatatgtatagttgcaactaatcctttgtta |
243 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9014616 |
taaacagttgcttaagtagaagaaataggtgcagcaccctcactgccacttgag-------gtcaaattcatatctatagttgcaactaatcctttgtta |
9014524 |
T |
|
| Q |
244 |
ttcttgtgattctttttcatagcacttaattcttcttctttctttataat------ttctaactaagatatatacatc---atattttccttcttcacta |
334 |
Q |
| |
|
||||| |||||||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||||| |||| ||||||||| | |||||| |
|
|
| T |
9014523 |
ttcttatgattcttttccatagcactcaattcttcttctttctttttaagctctccttctaactaagatatatgcatcttcatattttccctgttcactt |
9014424 |
T |
|
| Q |
335 |
gttctcggtaattaatatctgtggagcttaattgttttgaaaccatatccatgacgtagaagatgtgagaaattagtaatgaactgtgagaacaggaaat |
434 |
Q |
| |
|
|||| ||||||||||||||||||| | |||||||||||||||||||||||||| |||||||| |||||||| |||| |||||| ||||||||| |||| |
|
|
| T |
9014423 |
attctttgtaattaatatctgtggagatcaattgttttgaaaccatatccatgacctagaagatttgagaaatgagtattgaactttgagaacagaaaat |
9014324 |
T |
|
| Q |
435 |
gtagtttgc-gaaaatgaagagagttttgaaataagggagagaactccaacactgtttt |
492 |
Q |
| |
|
| | ||||| ||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9014323 |
gcaatttgcaaaaaatga--agagttttgaaagaagggagagaactccaacactgtttt |
9014267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 245 - 445
Target Start/End: Complemental strand, 9017971 - 9017762
Alignment:
| Q |
245 |
tcttgtgattctttttcatagcacttaattcttcttctttctttataat------ttctaactaagatatatacat---catattttccttcttcactag |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||| ||| |||||||||||||||||| | |
|
|
| T |
9017971 |
tcttgtgattctttttcatagcacttaattcttcttctttcttcttaagctctccttctaactaagacatatgcattttcatattttccttcttcacatg |
9017872 |
T |
|
| Q |
336 |
ttctcggtaattaatatctgtggagcttaattgttttgaaaccatatccatgacgtagaagatgtgagaaattagtaatgaactgtgagaacaggaaatg |
435 |
Q |
| |
|
||||| ||||||||| ||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
9017871 |
ttctctgtaattaatctctgtggagattaattgtttttaaaccaaatccatgacgtagaagatgtgagaaatgagtaatgaactgtgagaacagaaaatg |
9017772 |
T |
|
| Q |
436 |
tagtttgcga |
445 |
Q |
| |
|
||||||||| |
|
|
| T |
9017771 |
cagtttgcga |
9017762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 8994039 - 8993924
Alignment:
| Q |
1 |
tctatcatatcattttgaaaaactgaaatccttggattctaacattattagtcatttcatgacttaggcacactacacaatatactcataaatgtgatgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8994039 |
tctatcatatcattttgaaaaactgaaatccttcgattctaacattattagtcatttcatgacttaggcacactacacaatatactcataaatgtgacgc |
8993940 |
T |
|
| Q |
101 |
tatcatttaccgtgtc |
116 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
8993939 |
tatcatttatcgtgtc |
8993924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 241 - 484
Target Start/End: Complemental strand, 8987739 - 8987493
Alignment:
| Q |
241 |
ttattcttgtgattctttttcatagcacttaattcttcttctttctttataat------ttctaactaagatatatacatc---atattttccttcttca |
331 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||| ||| ||||||||||||| ||| ||| ||||||| |||||||| |
|
|
| T |
8987739 |
ttattcttgtgattctttttcgtagcacttatttcttcttctttctttctaagctctccttctaactaagatttatgtatcttcatatttttcttcttca |
8987640 |
T |
|
| Q |
332 |
ctagttctcggtaattaatatctgtggagcttaattgttttgaaaccatatccatgacgtagaagatgtgagaaattagtaatgaactgtgagaacagga |
431 |
Q |
| |
|
|| ||||| ||||||||||||||||||| | ||||||||||||||||| ||||| ||| |||||||||||||| | |||||| ||| ||||||| | |
|
|
| T |
8987639 |
cttgttctttgtaattaatatctgtggagatcaattgttttgaaaccat-tccataacg-agaagatgtgagaactgagtaat----tgtaagaacagaa |
8987546 |
T |
|
| Q |
432 |
aatgtagtttgcgaaaatgaagagagttttgaaataagggagagaactccaac |
484 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
8987545 |
aatgcagtttgcgaaaatgaagagaattttgaaacaagggagagaactccaac |
8987493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 9014725 - 9014673
Alignment:
| Q |
5 |
tcatatcattttgaaaaactgaaatccttggattctaacattattagtcatttc |
58 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9014725 |
tcatatcattttgaaaa-ctgaaatccttggattctaacattattagtcatttc |
9014673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 9018126 - 9018094
Alignment:
| Q |
84 |
actcataaatgtgatgctatcatttaccgtgtc |
116 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
9018126 |
actcataaatgtgatgctatcatttatcgtgtc |
9018094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 45555015 - 45555068
Alignment:
| Q |
234 |
tcctttgttattcttgtgattctttttcatagcacttaattcttcttctttctt |
287 |
Q |
| |
|
|||| ||||||||||| | ||||||| ||||||| |||||||| |||||||||| |
|
|
| T |
45555015 |
tcctctgttattcttgagcttcttttccatagcatttaattctgcttctttctt |
45555068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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