View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14617_high_1 (Length: 339)

Name: NF14617_high_1
Description: NF14617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14617_high_1
NF14617_high_1
[»] chr5 (11 HSPs)
chr5 (4-312)||(13826356-13826666)
chr5 (267-312)||(29789468-29789513)
chr5 (259-304)||(42879509-42879554)
chr5 (194-312)||(16040323-16040441)
chr5 (264-304)||(33922436-33922476)
chr5 (263-304)||(9409697-9409738)
chr5 (263-304)||(13490308-13490349)
chr5 (263-304)||(18888986-18889027)
chr5 (259-300)||(20892416-20892457)
chr5 (263-304)||(23962768-23962809)
chr5 (259-304)||(39537534-39537579)
[»] chr1 (6 HSPs)
chr1 (263-312)||(44310372-44310421)
chr1 (263-304)||(9023132-9023173)
chr1 (13-159)||(9022871-9023020)
chr1 (263-304)||(5049373-5049414)
chr1 (263-304)||(34307591-34307632)
chr1 (263-304)||(48596497-48596538)
[»] chr6 (8 HSPs)
chr6 (262-304)||(26817275-26817317)
chr6 (263-304)||(13758922-13758963)
chr6 (263-304)||(1131691-1131732)
chr6 (263-304)||(1422873-1422914)
chr6 (263-312)||(20990355-20990404)
chr6 (263-304)||(22012259-22012300)
chr6 (263-304)||(34043462-34043503)
chr6 (117-165)||(26213155-26213203)
[»] scaffold0016 (3 HSPs)
scaffold0016 (259-304)||(88252-88297)
scaffold0016 (259-304)||(88728-88773)
scaffold0016 (259-304)||(89204-89249)
[»] chr8 (5 HSPs)
chr8 (263-312)||(7263769-7263818)
chr8 (263-304)||(7973126-7973167)
chr8 (263-304)||(18327271-18327312)
chr8 (263-304)||(31597440-31597481)
chr8 (263-304)||(45117384-45117425)
[»] chr7 (7 HSPs)
chr7 (263-304)||(44733553-44733594)
chr7 (263-304)||(4539784-4539825)
chr7 (263-304)||(8389444-8389485)
chr7 (263-304)||(31072669-31072710)
chr7 (263-312)||(35478114-35478163)
chr7 (264-309)||(43824168-43824213)
chr7 (263-299)||(44733444-44733480)
[»] chr4 (6 HSPs)
chr4 (263-304)||(52458934-52458975)
chr4 (263-304)||(52460191-52460232)
chr4 (263-312)||(13957169-13957218)
chr4 (263-304)||(36213651-36213692)
chr4 (263-304)||(39480396-39480437)
chr4 (263-304)||(51758370-51758411)
[»] chr2 (8 HSPs)
chr2 (263-312)||(11199422-11199471)
chr2 (263-304)||(22576129-22576170)
chr2 (203-304)||(6221243-6221345)
chr2 (263-304)||(19091328-19091369)
chr2 (263-304)||(33015338-33015379)
chr2 (263-312)||(41826101-41826150)
chr2 (263-304)||(44314186-44314227)
chr2 (263-304)||(44322365-44322406)
[»] chr3 (5 HSPs)
chr3 (263-304)||(19157011-19157052)
chr3 (263-304)||(25071561-25071602)
chr3 (263-304)||(27941660-27941701)
chr3 (263-304)||(53077112-53077153)
chr3 (264-312)||(52448062-52448110)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 4 - 312
Target Start/End: Complemental strand, 13826666 - 13826356
Alignment:
Q  4 gctggccccagggcatagctcggaaatgcgacggtctaggacccatgttggtaggggtttaaaaaagtttttaaggtaagggt-aatatagaaatatttg 102  Q
    ||||| |||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||| || || | ||||||||||||||||    
T  13826666 gctggtcccagggcataggtccgaaatgcgacggtttaggacccatgttggtaggggtttaaaaaagtttttaagatagggatgaatatagaaatatttg 13826567  T
Q  103 gttgatggggacagatatagcaaaattctctcaaaatgctctaaacattgacatgataaagggg-tcaattgaaatcagttattgttttttacgcgagtt 201  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||    
T  13826566 gttgttggggacagatatagcaaaattctctgaaaatgctctaaacattgacatgataaaggggatgaattgaaatcagttattgttttttacgcgattt 13826467  T
Q  202 gctatatata-tccatgtagcacaagtatttttatatacacccttctgtnnnnnnnnnttgattgttcttaataatgtgttcaaaaatttattatcgaag 300  Q
    ||||||||||  ||||||||||||||||||| ||||||||||||  |||         ||| ||||||||||||||||| ||||||||||| ||||||||    
T  13826466 gctatatataccccatgtagcacaagtatttctatatacaccctcttgt-aaaaaaaattggttgttcttaataatgtgctcaaaaatttactatcgaag 13826368  T
Q  301 aaatcagtgata 312  Q
    ||||||||||||    
T  13826367 aaatcagtgata 13826356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 29789468 - 29789513
Alignment:
Q  267 tcttaataatgtgttcaaaaatttattatcgaagaaatcagtgata 312  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||    
T  29789468 tcttaataatgtgtccaaaaatttattatcgaagaaattagtgata 29789513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 42879509 - 42879554
Alignment:
Q  259 ttgattgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||||||||||||| || ||||||||||||||||||||||||    
T  42879509 ttgattgttcttaataatatgctcaaaaatttattatcgaagaaat 42879554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 312
Target Start/End: Complemental strand, 16040441 - 16040323
Alignment:
Q  194 cgcgagttgctatatatatcc-atgtagcacaagtatttttatatacacccttctgtnnnnnnnnnttgattgttcttaataatgtgttcaaaaatttat 292  Q
    ||||| ||||||||||||||| ||||||||||| ||||| |||||| ||||| || |         ||| ||||||||||||||||| |||||||||| |    
T  16040441 cgcgatttgctatatatatcccatgtagcacaaatatttctatataaaccctcctataaaaaaaa-ttggttgttcttaataatgtgctcaaaaatttgt 16040343  T
Q  293 tatcgaagaaatcagtgata 312  Q
    ||| |||||||| |||||||    
T  16040342 tattgaagaaattagtgata 16040323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 33922476 - 33922436
Alignment:
Q  264 tgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  33922476 tgttcataataatgtgttgaaaaatttattatcgaagaaat 33922436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 9409738 - 9409697
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||||||||| || | ||||||||||||||||||||||    
T  9409738 ttgttcttaataatatgctaaaaaatttattatcgaagaaat 9409697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 13490308 - 13490349
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||||||||| || || |||||||||||||||||||||    
T  13490308 ttgttcttaataatatgctcgaaaatttattatcgaagaaat 13490349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 18888986 - 18889027
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  18888986 ttgttcttgataatatgctcaaaaatttattatcgaagaaat 18889027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 20892457 - 20892416
Alignment:
Q  259 ttgattgttcttaataatgtgttcaaaaatttattatcgaag 300  Q
    |||||||||||||||||| || ||||||| ||||||||||||    
T  20892457 ttgattgttcttaataatatgctcaaaaaattattatcgaag 20892416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 23962768 - 23962809
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  23962768 ttgttcttgataatatgctcaaaaatttattatcgaagaaat 23962809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 39537579 - 39537534
Alignment:
Q  259 ttgattgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||||||||||||| || || ||||| |||||||||||||||    
T  39537579 ttgattgttcttaataatatgctcgaaaatatattatcgaagaaat 39537534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 44310372 - 44310421
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaatcagtgata 312  Q
    ||||||||||||||||| |||||||||||||||| ||||||| |||||||    
T  44310372 ttgttcttaataatgtgctcaaaaatttattatctaagaaattagtgata 44310421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 9023132 - 9023173
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  9023132 ttgttcttaataatgtgcgcaaaaatttattatcgaagaaat 9023173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 9022871 - 9023020
Alignment:
Q  13 agggcatagctcggaaatgcgacggtctaggacccatgttggtaggggtttaaaaaagtttttaaggtaagggta---atatagaaatatttggttgatg 109  Q
    |||||||||  ||| | ||||| || ||||| ||||||  ||||||||   |||||| |||||||||||||||     ||||||||||||||||||  ||    
T  9022871 agggcataggccgggagtgcgatggcctagggcccatgccggtagggggccaaaaaaatttttaaggtaagggggtgtatatagaaatatttggtttttg 9022970  T
Q  110 gggacagatatagcaaaattctctcaaaatgctctaaacattgacatgat 159  Q
    | |  | ||||||| ||||||||| |||| || | |||||||||||||||    
T  9022971 gaggtatatatagcgaaattctctgaaaaggccccaaacattgacatgat 9023020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 5049373 - 5049414
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  5049373 ttgttcttgataatatgctcaaaaatttattatcgaagaaat 5049414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 34307632 - 34307591
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  34307632 ttgttcttgataatatgctcaaaaatttattatcgaagaaat 34307591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 48596538 - 48596497
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  48596538 ttgttcttgataatatgctcaaaaatttattatcgaagaaat 48596497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 26817275 - 26817317
Alignment:
Q  262 attgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||||||||| ||| ||||||||||||||||||||||||    
T  26817275 attgttcttaataaggtgctcaaaaatttattatcgaagaaat 26817317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 13758963 - 13758922
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  13758963 ttgttcttaataatatgctcaaaaatttattatcgaagaaat 13758922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 1131691 - 1131732
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||||||||| || || |||||||||||||||||||||    
T  1131691 ttgttcttaataatatgctcgaaaatttattatcgaagaaat 1131732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 1422873 - 1422914
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||||||||| || || |||||||||||||||||||||    
T  1422873 ttgttcttaataatatgctcgaaaatttattatcgaagaaat 1422914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 20990355 - 20990404
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaatcagtgata 312  Q
    |||||||||||||| || |  ||||||||||||||||||||| |||||||    
T  20990355 ttgttcttaataatatgcttgaaaatttattatcgaagaaattagtgata 20990404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 22012300 - 22012259
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  22012300 ttgttcttgataatatgctcaaaaatttattatcgaagaaat 22012259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 34043462 - 34043503
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  34043462 ttgttcttgataatatgctcaaaaatttattatcgaagaaat 34043503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 26213203 - 26213155
Alignment:
Q  117 atatagcaaaattctctcaaaatgctctaaacattgacatgataaaggg 165  Q
    ||||||||||||||||| ||||  | | |||||||||||||||||||||    
T  26213203 atatagcaaaattctctgaaaagaccccaaacattgacatgataaaggg 26213155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 88297 - 88252
Alignment:
Q  259 ttgattgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||||||||||||| || || |||||||||||||||||||||    
T  88297 ttgattgttcttaataatatgctcgaaaatttattatcgaagaaat 88252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 88773 - 88728
Alignment:
Q  259 ttgattgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||||||||||||| || || |||||||||||||||||||||    
T  88773 ttgattgttcttaataatatgctcgaaaatttattatcgaagaaat 88728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 89249 - 89204
Alignment:
Q  259 ttgattgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||||||||||||| || || |||||||||||||||||||||    
T  89249 ttgattgttcttaataatatgctcgaaaatttattatcgaagaaat 89204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 7263818 - 7263769
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaatcagtgata 312  Q
    |||||||||||||| ||||  ||||||||||||||||||||| |||||||    
T  7263818 ttgttcttaataatatgtttgaaaatttattatcgaagaaattagtgata 7263769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 7973167 - 7973126
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  7973167 ttgttcttaataatatgctcaaaaatttattatcgaagaaat 7973126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 18327271 - 18327312
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  18327271 ttgttcttaataatatgctcaaaaatttattatcgaagaaat 18327312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 31597440 - 31597481
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  31597440 ttgttcttgataatatgctcaaaaatttattatcgaagaaat 31597481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 45117384 - 45117425
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  45117384 ttgttcttgataatatgctcaaaaatttattatcgaagaaat 45117425  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 44733553 - 44733594
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  44733553 ttgttcttaataatgtgttgaaaaatttattatcgaataaat 44733594  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 4539784 - 4539825
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  4539784 ttgttcttgataatatgctcaaaaatttattatcgaagaaat 4539825  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 8389485 - 8389444
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  8389485 ttgttcttgataatatgctcaaaaatttattatcgaagaaat 8389444  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 31072710 - 31072669
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  31072710 ttgttcttgataatatgctcaaaaatttattatcgaagaaat 31072669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 35478163 - 35478114
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaatcagtgata 312  Q
    |||||||||||||| || |  ||||||||||||||||||||| |||||||    
T  35478163 ttgttcttaataatatgcttgaaaatttattatcgaagaaattagtgata 35478114  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 43824168 - 43824213
Alignment:
Q  264 tgttcttaataatgtgttcaaaaatttattatcgaagaaatcagtg 309  Q
    ||||||||||||| || |||||||||||||||| ||||||| ||||    
T  43824168 tgttcttaataatatgatcaaaaatttattatcaaagaaattagtg 43824213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 44733444 - 44733480
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaa 299  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  44733444 ttgttcttaataatgtgttgaaaaatctattatcgaa 44733480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 52458934 - 52458975
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    ||||||||||||||||| |||||||||||| |||||||||||    
T  52458934 ttgttcttaataatgtgctcaaaaatttatcatcgaagaaat 52458975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 52460191 - 52460232
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    ||||||||||||||||| |||||||||||| |||||||||||    
T  52460191 ttgttcttaataatgtgctcaaaaatttatcatcgaagaaat 52460232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 13957169 - 13957218
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaatcagtgata 312  Q
    ||||||||||||||||| |  |||| |||||||||||||||| |||||||    
T  13957169 ttgttcttaataatgtgctagaaaaattattatcgaagaaattagtgata 13957218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 36213651 - 36213692
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||||||||| || |||||| |||||||||||||||||    
T  36213651 ttgttcttaataatatgctcaaaattttattatcgaagaaat 36213692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 39480437 - 39480396
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||||||||| || |||||||||||||||| |||||||    
T  39480437 ttgttcttaataatatgctcaaaaatttattatcaaagaaat 39480396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 51758370 - 51758411
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||||||||||||   ||||||||||||||||||||||    
T  51758370 ttgttcttaataatgtgccaaaaaatttattatcgaagaaat 51758411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 11199471 - 11199422
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaatcagtgata 312  Q
    |||||||||||||| || | |||||||||||||||||||||| |||||||    
T  11199471 ttgttcttaataatatgctaaaaaatttattatcgaagaaattagtgata 11199422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 22576170 - 22576129
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  22576170 ttgttcttaataatatgctcaaaaatttattatcgaagaaat 22576129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 304
Target Start/End: Original strand, 6221243 - 6221345
Alignment:
Q  203 ctatatatatcc-atgtagcacaagtatttttatatacacccttctgtnnnnnnnnnttgattgttcttaataatgtgttcaaaaatttattatcgaaga 301  Q
    |||||||||||| ||||| ||||| ||||| |||||||||||| || |         ||| |||||||| ||||| || |||||||||||||||||||||    
T  6221243 ctatatatatcccatgtaacacaaatatttctatatacaccctcctataaaaaaaatttggttgttcttgataatatgctcaaaaatttattatcgaaga 6221342  T
Q  302 aat 304  Q
    |||    
T  6221343 aat 6221345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 19091369 - 19091328
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    ||||||||||||||||||  ||||||||||||||||| ||||    
T  19091369 ttgttcttaataatgtgtcaaaaaatttattatcgaaaaaat 19091328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 33015379 - 33015338
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  33015379 ttgttcttgataatatgctcaaaaatttattatcgaagaaat 33015338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 41826150 - 41826101
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaatcagtgata 312  Q
    |||||||||||||| || |  ||||||||||||||||||||| |||||||    
T  41826150 ttgttcttaataatatgcttgaaaatttattatcgaagaaattagtgata 41826101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 44314227 - 44314186
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  44314227 ttgttcttgataatatgctcaaaaatttattatcgaagaaat 44314186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 44322406 - 44322365
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  44322406 ttgttcttgataatatgctcaaaaatttattatcgaagaaat 44322365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 19157011 - 19157052
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  19157011 ttgttcttgataatatgctcaaaaatttattatcgaagaaat 19157052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 25071561 - 25071602
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  25071561 ttgttcttgataatatgctcaaaaatttattatcgaagaaat 25071602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 27941701 - 27941660
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  27941701 ttgttcttgataatatgctcaaaaatttattatcgaagaaat 27941660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 53077153 - 53077112
Alignment:
Q  263 ttgttcttaataatgtgttcaaaaatttattatcgaagaaat 304  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  53077153 ttgttcttgataatatgctcaaaaatttattatcgaagaaat 53077112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 52448062 - 52448110
Alignment:
Q  264 tgttcttaataatgtgttcaaaaatttattatcgaagaaatcagtgata 312  Q
    ||||||||||||| || |  ||||||||||||||||||||| |||||||    
T  52448062 tgttcttaataatatgcttgaaaatttattatcgaagaaattagtgata 52448110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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