View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14617_high_14 (Length: 331)

Name: NF14617_high_14
Description: NF14617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14617_high_14
NF14617_high_14
[»] chr2 (33 HSPs)
chr2 (81-331)||(37009872-37010135)
chr2 (9-82)||(15228115-15228188)
chr2 (11-80)||(16108443-16108512)
chr2 (43-82)||(13197645-13197684)
chr2 (11-81)||(16805759-16805829)
chr2 (43-82)||(22897389-22897428)
chr2 (11-82)||(34883816-34883887)
chr2 (43-81)||(16845072-16845110)
chr2 (11-81)||(40607701-40607771)
chr2 (11-80)||(1359791-1359860)
chr2 (11-80)||(2438225-2438294)
chr2 (137-182)||(13238929-13238974)
chr2 (11-80)||(27560206-27560275)
chr2 (11-80)||(32120944-32121013)
chr2 (43-82)||(11201681-11201720)
chr2 (47-81)||(1360055-1360089)
chr2 (48-82)||(8841395-8841429)
chr2 (43-81)||(8990203-8990241)
chr2 (43-81)||(11865289-11865327)
chr2 (43-81)||(20252209-20252247)
chr2 (9-75)||(30466110-30466175)
chr2 (43-81)||(34062665-34062703)
chr2 (43-81)||(41450515-41450553)
chr2 (44-81)||(6027617-6027654)
chr2 (43-80)||(7491844-7491881)
chr2 (43-80)||(8716892-8716929)
chr2 (43-80)||(11852185-11852222)
chr2 (137-182)||(17220436-17220481)
chr2 (43-80)||(17408294-17408331)
chr2 (43-80)||(26334845-26334882)
chr2 (47-80)||(29239333-29239366)
chr2 (43-80)||(36131028-36131065)
chr2 (43-75)||(41968202-41968234)
[»] chr7 (29 HSPs)
chr7 (9-80)||(19920563-19920634)
chr7 (11-81)||(34979045-34979115)
chr7 (11-80)||(20074889-20074958)
chr7 (11-82)||(39871581-39871652)
chr7 (43-81)||(29177252-29177290)
chr7 (11-81)||(38858297-38858367)
chr7 (43-80)||(7703820-7703857)
chr7 (11-80)||(21295151-21295220)
chr7 (43-80)||(25247690-25247727)
chr7 (11-80)||(41252329-41252398)
chr7 (11-75)||(17317446-17317510)
chr7 (43-82)||(6387323-6387362)
chr7 (43-82)||(12930316-12930355)
chr7 (43-82)||(32814431-32814470)
chr7 (43-82)||(33858866-33858905)
chr7 (9-75)||(9299102-9299168)
chr7 (43-81)||(29286037-29286075)
chr7 (43-81)||(36698131-36698169)
chr7 (43-80)||(18751982-18752019)
chr7 (43-80)||(19292839-19292876)
chr7 (43-80)||(19845669-19845706)
chr7 (43-80)||(21119557-21119594)
chr7 (43-80)||(26255096-26255133)
chr7 (43-80)||(32872375-32872412)
chr7 (43-80)||(39197718-39197755)
chr7 (11-80)||(40300230-40300299)
chr7 (43-80)||(41026096-41026133)
chr7 (43-80)||(48521029-48521066)
chr7 (46-82)||(22991747-22991783)
[»] chr3 (37 HSPs)
chr3 (11-82)||(7051688-7051759)
chr3 (9-82)||(7181348-7181421)
chr3 (13-81)||(33868447-33868515)
chr3 (11-82)||(22103897-22103968)
chr3 (11-82)||(25149090-25149161)
chr3 (11-82)||(37728711-37728782)
chr3 (11-82)||(44543780-44543851)
chr3 (43-81)||(26221287-26221325)
chr3 (43-81)||(32963105-32963143)
chr3 (11-81)||(35868051-35868121)
chr3 (11-80)||(9499465-9499534)
chr3 (43-80)||(20656310-20656347)
chr3 (12-80)||(14428610-14428678)
chr3 (46-81)||(10044841-10044876)
chr3 (43-82)||(12050392-12050431)
chr3 (43-82)||(28673294-28673333)
chr3 (11-82)||(45745776-45745847)
chr3 (43-82)||(51284062-51284101)
chr3 (139-182)||(53078431-53078474)
chr3 (46-80)||(32978481-32978515)
chr3 (43-81)||(43868102-43868140)
chr3 (11-80)||(4024052-4024121)
chr3 (43-80)||(10220933-10220970)
chr3 (43-80)||(16435236-16435273)
chr3 (43-80)||(21458982-21459019)
chr3 (43-80)||(21756486-21756523)
chr3 (44-81)||(23776495-23776532)
chr3 (43-80)||(26593765-26593802)
chr3 (43-80)||(27646306-27646343)
chr3 (43-80)||(30041017-30041054)
chr3 (43-80)||(33212397-33212434)
chr3 (43-80)||(36005502-36005539)
chr3 (43-80)||(45252773-45252810)
chr3 (43-80)||(46049986-46050023)
chr3 (43-80)||(48887946-48887983)
chr3 (43-80)||(50517522-50517559)
chr3 (43-80)||(53164163-53164200)
[»] chr5 (22 HSPs)
chr5 (11-81)||(15190783-15190853)
chr5 (11-82)||(41641093-41641164)
chr5 (11-81)||(22527691-22527761)
chr5 (11-81)||(40004377-40004447)
chr5 (43-81)||(41384172-41384210)
chr5 (11-80)||(1265949-1266018)
chr5 (11-80)||(9828393-9828462)
chr5 (11-80)||(13660861-13660930)
chr5 (43-82)||(16127257-16127296)
chr5 (11-82)||(24857554-24857625)
chr5 (47-82)||(41383910-41383945)
chr5 (46-80)||(2106831-2106865)
chr5 (43-81)||(3686754-3686792)
chr5 (43-81)||(6673228-6673266)
chr5 (43-81)||(14913647-14913685)
chr5 (43-81)||(22657767-22657805)
chr5 (43-81)||(26894873-26894911)
chr5 (11-81)||(34662203-34662273)
chr5 (43-81)||(35547260-35547298)
chr5 (43-81)||(40643093-40643131)
chr5 (44-80)||(7951562-7951598)
chr5 (46-82)||(9020692-9020728)
[»] chr8 (29 HSPs)
chr8 (11-80)||(36177071-36177140)
chr8 (9-80)||(2944238-2944309)
chr8 (11-82)||(13153926-13153997)
chr8 (11-82)||(34490515-34490586)
chr8 (12-82)||(5774046-5774116)
chr8 (11-81)||(32675725-32675795)
chr8 (43-81)||(40529306-40529344)
chr8 (43-81)||(43654203-43654241)
chr8 (43-81)||(44748463-44748501)
chr8 (11-80)||(51063-51132)
chr8 (11-80)||(14699452-14699521)
chr8 (11-80)||(28192143-28192212)
chr8 (11-80)||(41014504-41014573)
chr8 (44-80)||(44502620-44502656)
chr8 (43-82)||(28572044-28572083)
chr8 (43-82)||(28579637-28579676)
chr8 (43-82)||(34568488-34568527)
chr8 (9-80)||(39029178-39029249)
chr8 (139-182)||(41408271-41408314)
chr8 (43-81)||(8251933-8251971)
chr8 (43-81)||(18754143-18754181)
chr8 (43-80)||(1774342-1774379)
chr8 (43-80)||(7758909-7758946)
chr8 (43-80)||(8951428-8951465)
chr8 (137-182)||(29970881-29970926)
chr8 (43-80)||(33745895-33745932)
chr8 (43-80)||(37023284-37023321)
chr8 (150-182)||(15677739-15677771)
chr8 (46-82)||(35179598-35179634)
[»] chr1 (29 HSPs)
chr1 (9-81)||(4102680-4102752)
chr1 (11-82)||(11741395-11741466)
chr1 (11-82)||(16576060-16576131)
chr1 (11-82)||(37951917-37951988)
chr1 (11-82)||(39497431-39497502)
chr1 (11-81)||(45039411-45039481)
chr1 (11-81)||(52431142-52431212)
chr1 (11-80)||(1039349-1039418)
chr1 (11-80)||(1046255-1046324)
chr1 (11-80)||(15811200-15811269)
chr1 (11-80)||(23541979-23542048)
chr1 (11-80)||(36694854-36694923)
chr1 (11-80)||(36710955-36711024)
chr1 (11-80)||(49907021-49907090)
chr1 (47-82)||(7784258-7784293)
chr1 (43-82)||(18237092-18237131)
chr1 (47-82)||(30289600-30289635)
chr1 (12-79)||(30289831-30289898)
chr1 (43-82)||(50007973-50008012)
chr1 (43-82)||(50246929-50246968)
chr1 (43-81)||(22567065-22567103)
chr1 (43-81)||(50008483-50008521)
chr1 (43-80)||(943637-943674)
chr1 (43-80)||(30290265-30290302)
chr1 (46-75)||(34503240-34503269)
chr1 (43-80)||(39363194-39363231)
chr1 (43-80)||(44649629-44649666)
chr1 (43-80)||(46075867-46075904)
chr1 (43-75)||(45285810-45285842)
[»] chr6 (12 HSPs)
chr6 (43-82)||(25197150-25197189)
chr6 (46-80)||(25024509-25024543)
chr6 (11-80)||(34301800-34301869)
chr6 (43-82)||(7772174-7772213)
chr6 (46-80)||(1730104-1730138)
chr6 (43-81)||(4844399-4844437)
chr6 (43-81)||(9341837-9341875)
chr6 (43-81)||(30248646-30248684)
chr6 (43-80)||(231105-231142)
chr6 (47-80)||(1779784-1779817)
chr6 (43-80)||(8743188-8743225)
chr6 (43-80)||(29036126-29036163)
[»] chr4 (33 HSPs)
chr4 (43-82)||(17610020-17610059)
chr4 (11-81)||(4035824-4035894)
chr4 (11-77)||(4549857-4549923)
chr4 (43-81)||(24754077-24754115)
chr4 (11-80)||(5375525-5375594)
chr4 (11-80)||(5743627-5743696)
chr4 (44-81)||(6462691-6462728)
chr4 (43-80)||(6753525-6753562)
chr4 (43-80)||(15241480-15241517)
chr4 (11-80)||(34273187-34273256)
chr4 (11-80)||(39144404-39144473)
chr4 (11-80)||(47806860-47806929)
chr4 (11-80)||(50352064-50352133)
chr4 (11-80)||(55632227-55632296)
chr4 (9-80)||(26625968-26626039)
chr4 (43-82)||(28298371-28298410)
chr4 (11-82)||(30050052-30050123)
chr4 (43-82)||(45742806-45742845)
chr4 (11-80)||(4455060-4455130)
chr4 (43-77)||(20747173-20747207)
chr4 (43-80)||(9328240-9328277)
chr4 (43-80)||(10588075-10588112)
chr4 (43-80)||(19282081-19282118)
chr4 (43-80)||(30771528-30771565)
chr4 (43-80)||(32032993-32033030)
chr4 (43-80)||(33413518-33413555)
chr4 (43-80)||(44294789-44294826)
chr4 (44-73)||(49490169-49490198)
chr4 (43-80)||(50533884-50533921)
chr4 (43-80)||(52977982-52978019)
chr4 (46-82)||(26889902-26889938)
chr4 (44-80)||(36901111-36901147)
chr4 (43-75)||(54623806-54623838)
[»] scaffold0457 (1 HSPs)
scaffold0457 (43-80)||(4663-4700)
[»] scaffold0019 (1 HSPs)
scaffold0019 (11-80)||(117846-117915)
[»] scaffold0250 (1 HSPs)
scaffold0250 (43-82)||(9426-9465)
[»] scaffold0008 (1 HSPs)
scaffold0008 (43-82)||(259122-259161)
[»] scaffold0604 (1 HSPs)
scaffold0604 (9-80)||(3749-3819)
[»] scaffold0122 (1 HSPs)
scaffold0122 (43-81)||(12064-12102)
[»] scaffold0121 (1 HSPs)
scaffold0121 (43-81)||(24630-24668)
[»] scaffold0029 (1 HSPs)
scaffold0029 (43-81)||(51682-51720)
[»] scaffold0012 (2 HSPs)
scaffold0012 (43-81)||(47639-47677)
scaffold0012 (47-80)||(47904-47937)


Alignment Details
Target: chr2 (Bit Score: 176; Significance: 9e-95; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 81 - 331
Target Start/End: Complemental strand, 37010135 - 37009872
Alignment:
Q  81 ttctctcttttatcgtaaaccaactcaaacaaaaattgtttgatcacacattaatgtttaactaacatcaattttacaaatttaattcaatcaaaatcaa 180  Q
    |||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  37010135 ttctctcttttatcctaaacctactcaaacaaaaattgtttgatcatacattaatgtttaactaaaatcaattttacaaatttaattcaatcaaaatcag 37010036  T
Q  181 ttac-------------aacacacgcttaaaatcatatttatactcatttttaattttgggtctacacaaaatcgacttagctaggaatgtattatttat 267  Q
    |||              |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  37010035 ttaataatatagaatgaaacacacgcttaaaatcatatttatactcattcttaattttgggtctacacaaaatcgacttagctacgaatgtattttttat 37009936  T
Q  268 caacaagctcgtgaatttggtctctaaatcaatacctttggtgaccaattattttgtctatgag 331  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  37009935 caacaagctcgtgaatttggtctttaaatcaatacctttcgtgaccaattattttgtctatgag 37009872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 15228115 - 15228188
Alignment:
Q  9 agcaaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||||||||||||||| ||        |||||||||| |||||||||||||||||||||||||||||    
T  15228115 agcaaaggggtcttataaaaagggacaaaaaaaattctcaaaaggatcttataattagggacggagggagtatt 15228188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 16108443 - 16108512
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||||||||    
T  16108443 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagaatcttataattagggacggagggagta 16108512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 13197645 - 13197684
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13197645 ttctcaaaagaatcttataattagggacggagggagtatt 13197684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 16805759 - 16805829
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||||||||||||| ||        |||||||||| ||||||||||||||||||||||||||||    
T  16805759 caaaggggtcttataaaaagggacaaaaaaaattctcaaaaggatcttataattagggacggagggagtat 16805829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 22897428 - 22897389
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  22897428 ttctcaaaaggatcttataattagggacggagggagtatt 22897389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 34883816 - 34883887
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||||    
T  34883816 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtatt 34883887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 16845072 - 16845110
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  16845072 ttctcaaaaggatcttataattagggacggagggagtat 16845110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 40607771 - 40607701
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||||||||||||| ||        ||||||||||  |||||||||||||||||||||||||||    
T  40607771 caaaggggtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagtat 40607701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 1359860 - 1359791
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||| |||| |||||||||||||||||||||||||||    
T  1359860 caaaggggtcttataaaaagggacaaaaaaaattctccaaaggatcttataattagggacggagggagta 1359791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 2438294 - 2438225
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  2438294 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 2438225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 13238929 - 13238974
Alignment:
Q  137 tttaactaacatcaattttacaaatttaattcaatcaaaatcaatt 182  Q
    ||||||||| |||||||||||||| | |||||||||||||||||||    
T  13238929 tttaactaaaatcaattttacaaaatgaattcaatcaaaatcaatt 13238974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 27560275 - 27560206
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  27560275 caaaggggtcttataaaaagggacaaaaatttttctcaaaagggtcttataattagggacggagggagta 27560206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 32121013 - 32120944
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        || ||||||| |||||||||||||||||||||||||||    
T  32121013 caaaggggtcttataaaaagggacaaatttttttttcaaaaggatcttataattagggacggagggagta 32120944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 11201720 - 11201681
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  11201720 ttctcaaaagggtcttataattagggacggagggagtatt 11201681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 1360055 - 1360089
Alignment:
Q  47 caaaagaatcttataattagggacggagggagtat 81  Q
    ||||||| |||||||||||||||||||||||||||    
T  1360055 caaaagagtcttataattagggacggagggagtat 1360089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 8841429 - 8841395
Alignment:
Q  48 aaaagaatcttataattagggacggagggagtatt 82  Q
    |||||| ||||||||||||||||||||||||||||    
T  8841429 aaaagagtcttataattagggacggagggagtatt 8841395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 8990241 - 8990203
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  8990241 ttctcaaaaagatcttataattagggacggagggagtat 8990203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 11865289 - 11865327
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  11865289 ttctcaaaagagtcttataattagggacggaggtagtat 11865327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 20252247 - 20252209
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  20252247 ttctcaaaagggtcttataattagggacggagggagtat 20252209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 30466175 - 30466110
Alignment:
Q  9 agcaaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagg 75  Q
    |||||||||||||||||||||||||         |||||||||| ||||||||||||||||||||||    
T  30466175 agcaaaggggtcttataaaaaggaa-aaaaaaaattctcaaaaggatcttataattagggacggagg 30466110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 34062665 - 34062703
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  34062665 ttctcaaaagggtcttataattagggacggagggagtat 34062703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 41450553 - 41450515
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  41450553 ttctcaaaagggtcttataattagggacggagggagtat 41450515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 6027654 - 6027617
Alignment:
Q  44 tctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  6027654 tctcaaaaggatcttataattagggacggaggtagtat 6027617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 7491881 - 7491844
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  7491881 ttctcaaaagggtcttataattagggacggagggagta 7491844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 8716892 - 8716929
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  8716892 ttctcaaaagggtcttataattagggacggagggagta 8716929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 11852185 - 11852222
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  11852185 ttctcaaaaggatcttataattagggacggaggtagta 11852222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 17220436 - 17220481
Alignment:
Q  137 tttaactaacatcaattttacaaatttaattcaatcaaaatcaatt 182  Q
    |||||||||  |||||||||||||  ||||||||||||||||||||    
T  17220436 tttaactaaagtcaattttacaaaactaattcaatcaaaatcaatt 17220481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 17408294 - 17408331
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  17408294 ttctcaaaagggtcttataattagggacggagggagta 17408331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 26334845 - 26334882
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  26334845 ttctcaaaagagtcttataattagggacggaggtagta 26334882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 29239366 - 29239333
Alignment:
Q  47 caaaagaatcttataattagggacggagggagta 80  Q
    ||||||| ||||||||||||||||||||||||||    
T  29239366 caaaagagtcttataattagggacggagggagta 29239333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 36131028 - 36131065
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  36131028 ttctcaaaagggtcttataattagggacggagggagta 36131065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 41968202 - 41968234
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagg 75  Q
    |||||||||| ||||||||||||||||||||||    
T  41968202 ttctcaaaaggatcttataattagggacggagg 41968234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 19920634 - 19920563
Alignment:
Q  9 agcaaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||||||||        ||||||||||  ||||||||||||||||||||||||||    
T  19920634 agcaaaggggtcttataaaaaggaacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 19920563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 34979045 - 34979115
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||||||||||||| ||        ||||||||||| |||||||||||||||||||||||||||    
T  34979045 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagagtcttataattagggacggagggagtat 34979115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 20074958 - 20074889
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||||| ||||||||||||||||||||||||    
T  20074958 caaaggggtcttataaaaagggacaacaaatattctcaaaagaatattataattagggacggagggagta 20074889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 39871581 - 39871652
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||||    
T  39871581 caaaggggtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagtatt 39871652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 29177252 - 29177290
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  29177252 ttctcaaaaggatcttataattagggacggagggagtat 29177290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 38858367 - 38858297
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||||||||||||| ||        ||||||||||  |||||||||||||||||||||||||||    
T  38858367 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtat 38858297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 7703820 - 7703857
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  7703820 ttctcaaaagaatcttataattaaggacggagggagta 7703857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 21295220 - 21295151
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  21295220 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 21295151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 25247690 - 25247727
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  25247690 ttctcaaaagagtcttataattagggacggagggagta 25247727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 41252329 - 41252398
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  41252329 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 41252398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 17317510 - 17317446
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagg 75  Q
    ||||||||||||||||||||| ||        |||||||||| ||||||||||||||||||||||    
T  17317510 caaaggggtcttataaaaagggacaaaaaaaattctcaaaaggatcttataattagggacggagg 17317446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 6387362 - 6387323
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  6387362 ttctcaaaagagtcttataattagagacggagggagtatt 6387323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 12930355 - 12930316
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  12930355 ttctcaaaagagtcttataattagggacggaggtagtatt 12930316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 32814470 - 32814431
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  32814470 ttctcaaaagggtcttataattagggacggagggagtatt 32814431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 33858866 - 33858905
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  33858866 ttctcaaaagggtcttataattagggacggagggagtatt 33858905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 9299168 - 9299102
Alignment:
Q  9 agcaaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagg 75  Q
    |||||||||| |||||||||||| ||        |||||||||| ||||||||||||||||||||||    
T  9299168 agcaaaggggacttataaaaagggacaaaaaaaattctcaaaagtatcttataattagggacggagg 9299102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 29286037 - 29286075
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  29286037 ttctcaaaagggtcttataattagggacggagggagtat 29286075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 36698131 - 36698169
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  36698131 ttctcaaaagggtcttataattagggacggagggagtat 36698169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 18751982 - 18752019
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  18751982 ttctcaaaagagtcttataattagggacggaggtagta 18752019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 19292876 - 19292839
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  19292876 ttctcaaaaggatcttataattagggacggaggtagta 19292839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 19845669 - 19845706
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  19845669 ttctcaaaaggatcttataattagggacggaggtagta 19845706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 21119594 - 21119557
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  21119594 ttctcaaaaggatcttataattagggacggaggtagta 21119557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 26255133 - 26255096
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  26255133 ttctcaaaagggtcttataattagggacggagggagta 26255096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 32872375 - 32872412
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  32872375 ttctcaaaagggtcttataattagggacggagggagta 32872412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 39197755 - 39197718
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  39197755 ttctcaaaagggtcttataattagggacggagggagta 39197718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 40300299 - 40300230
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||         |||||||||  ||||||||||||||||||||||||||    
T  40300299 caaaggggtcttataaaaagggacaaaaaaaaatctcaaaagggtcttataattagggacggagggagta 40300230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 41026096 - 41026133
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  41026096 ttctcaaaagggtcttataattagggacggagggagta 41026133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 48521066 - 48521029
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  48521066 ttctcaaaagggtcttataattagggacggagggagta 48521029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 22991747 - 22991783
Alignment:
Q  46 tcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  22991747 tcaaaaggatcttataattagggacggaggtagtatt 22991783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 7051688 - 7051759
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||||||||||||| ||        |||||||||| |||||||||||||||||||||||||||||    
T  7051688 caaaggggtcttataaaaagggacaaaaaaaattctcaaaaggatcttataattagggacggagggagtatt 7051759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 7181421 - 7181348
Alignment:
Q  9 agcaaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||||    
T  7181421 agcaaaggggtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagtatt 7181348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 33868515 - 33868447
Alignment:
Q  13 aaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||||||||||| ||        |||||||||| ||||||||||||||||||||||||||||    
T  33868515 aaggggtcttataaaaagggacaaaaaaaattctcaaaaggatcttataattagggacggagggagtat 33868447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 22103897 - 22103968
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||||    
T  22103897 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtatt 22103968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 25149090 - 25149161
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||||    
T  25149090 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtatt 25149161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 37728782 - 37728711
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||||    
T  37728782 caaaggggtcttataaaaagggacaacaaatattctcaaaagggtcttataattagggacggagggagtatt 37728711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 44543851 - 44543780
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||||    
T  44543851 caaaggggtcttataaaaagggacaaaagaaattctcaaaagggtcttataattagggacggagggagtatt 44543780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 26221325 - 26221287
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  26221325 ttctcaaaagagtcttataattagggacggagggagtat 26221287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 32963105 - 32963143
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  32963105 ttctcaaaaggatcttataattagggacggagggagtat 32963143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 35868051 - 35868121
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||||||||||||| ||        ||||||||||  |||||||||||||||||||||||||||    
T  35868051 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtat 35868121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 9499465 - 9499534
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  9499465 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 9499534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 20656310 - 20656347
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  20656310 ttctcaaaagaatcttataattaggaacggagggagta 20656347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 14428678 - 14428610
Alignment:
Q  12 aaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    |||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  14428678 aaaggggtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagta 14428610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 81
Target Start/End: Complemental strand, 10044876 - 10044841
Alignment:
Q  46 tcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||| ||||||||||||||||||||||||||||    
T  10044876 tcaaaaggatcttataattagggacggagggagtat 10044841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 12050392 - 12050431
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  12050392 ttctcaaaagggtcttataattagggacggagggagtatt 12050431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 28673294 - 28673333
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  28673294 ttctcaaaaggatcttataattagggacggaggtagtatt 28673333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 45745847 - 45745776
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||||||||||||| ||        || |||||||| |||||||||| |||||||||||||||||    
T  45745847 caaaggggtcttataaaaagggacaattttttttttcaaaagagtcttataatttgggacggagggagtatt 45745776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 51284062 - 51284101
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  51284062 ttctcaaaagggtcttataattagggacggagggagtatt 51284101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 53078431 - 53078474
Alignment:
Q  139 taactaacatcaattttacaaatttaattcaatcaaaatcaatt 182  Q
    ||||||| ||||||| |||||| |||||||||||||||||||||    
T  53078431 taactaaaatcaattctacaaaattaattcaatcaaaatcaatt 53078474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 32978515 - 32978481
Alignment:
Q  46 tcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||| |||||||||||||||||||||||||||    
T  32978515 tcaaaaggatcttataattagggacggagggagta 32978481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 43868140 - 43868102
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  43868140 ttctcaaaagggtcttataattagggacggagggagtat 43868102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 4024121 - 4024052
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||         |||||||||  ||||||||||||||||||||||||||    
T  4024121 caaaggggtcttataaaaagggacaaaaaaaaatctcaaaagggtcttataattagggacggagggagta 4024052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 10220970 - 10220933
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  10220970 ttctcaaaagggtcttataattagggacggagggagta 10220933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 16435236 - 16435273
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  16435236 ttctcaaaaggatcttataattagagacggagggagta 16435273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 21459019 - 21458982
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  21459019 ttctcaaaaggatcttataattagggacggaggtagta 21458982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 21756523 - 21756486
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  21756523 ttctcaaaagggtcttataattagggacggagggagta 21756486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 23776495 - 23776532
Alignment:
Q  44 tctcaaaagaatcttataattagggacggagggagtat 81  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  23776495 tctcaaaaaaatcttataattagggacggaggtagtat 23776532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 26593765 - 26593802
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  26593765 ttctcaaaagggtcttataattagggacggagggagta 26593802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 27646306 - 27646343
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  27646306 ttctcaaaaggatcttataattagggacggaggtagta 27646343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 30041017 - 30041054
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  30041017 ttctcaaaagagtcttataattaggaacggagggagta 30041054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 33212434 - 33212397
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  33212434 ttctcaaaaggatcttataattagggacggaggtagta 33212397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 36005539 - 36005502
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  36005539 ttctcaaaaaaatcttataattagggacggaggaagta 36005502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 45252810 - 45252773
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  45252810 ttctcaaaagggtcttataattagggacggagggagta 45252773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 46049986 - 46050023
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  46049986 ttctcaaaagggtcttataattagggacggagggagta 46050023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 48887946 - 48887983
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  48887946 ttctcaaaagaatcttataattatggacggaggtagta 48887983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 50517522 - 50517559
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  50517522 ttctcaaaaggatcttataattagggacggaggtagta 50517559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 53164200 - 53164163
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  53164200 ttctcaaaaggatcttataattagggacggaggtagta 53164163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 15190783 - 15190853
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||||||||||||| ||        ||||||||||| |||||||||||||||||||||||||||    
T  15190783 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagagtcttataattagggacggagggagtat 15190853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 41641164 - 41641093
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||||||||||||| ||        |||||||||  |||||||||||||||||||||||||||||    
T  41641164 caaaggggtcttataaaaagggacaaaaaaaattctcaaaatgatcttataattagggacggagggagtatt 41641093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 22527761 - 22527691
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||||||||||||| ||        ||||||||||  |||||||||||||||||||||||||||    
T  22527761 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtat 22527691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 40004377 - 40004447
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||||||||||||| ||        ||||||||||  |||||||||||||||||||||||||||    
T  40004377 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtat 40004447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 41384172 - 41384210
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  41384172 ttctcaaaaggatcttataattagggacggagggagtat 41384210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 1266018 - 1265949
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  1266018 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 1265949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 9828462 - 9828393
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  9828462 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 9828393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 13660930 - 13660861
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        |||||||||| ||||||||||||| |||||||||||||    
T  13660930 caaaggggtcttataaaaagggacaaaaaaaattctcaaaaggatcttataattagagacggagggagta 13660861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 16127296 - 16127257
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  16127296 ttctcaaaagggtcttataattagggacggagggagtatt 16127257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 24857625 - 24857554
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||||||||||||| ||        || |||||||| ||||||||||||||||||||| ||||||    
T  24857625 caaaggggtcttataaaaagggacaaattattttttcaaaagagtcttataattagggacggaggtagtatt 24857554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 41383945 - 41383910
Alignment:
Q  47 caaaagaatcttataattagggacggagggagtatt 82  Q
    |||||| |||||||||||||||||||||||||||||    
T  41383945 caaaaggatcttataattagggacggagggagtatt 41383910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 2106865 - 2106831
Alignment:
Q  46 tcaaaagaatcttataattagggacggagggagta 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  2106865 tcaaaagaatcttataattatggacggagggagta 2106831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 3686754 - 3686792
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||| ||||||||||||||||||| |||||||    
T  3686754 ttctcaaaagagtcttataattagggacggaaggagtat 3686792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 6673228 - 6673266
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  6673228 ttctcaaaagggtcttataattagggacggagggagtat 6673266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 14913685 - 14913647
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  14913685 ttctcaaaagggtcttataattagggacggagggagtat 14913647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 22657805 - 22657767
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  22657805 ttctcaaaaggatcttataattagggacggaggtagtat 22657767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 26894873 - 26894911
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  26894873 ttctcaaaagggtcttataattagggacggagggagtat 26894911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 34662273 - 34662203
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||||||||||||| ||         |||||||||  |||||||||||||||||||||||||||    
T  34662273 caaaggggtcttataaaaagggacaaaaaaaactctcaaaagggtcttataattagggacggagggagtat 34662203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 35547298 - 35547260
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  35547298 ttctcaaaaaaatcttataattagggacggaggtagtat 35547260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 40643131 - 40643093
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  40643131 ttctcaaaaggatcttataattagggacggaggtagtat 40643093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 7951598 - 7951562
Alignment:
Q  44 tctcaaaagaatcttataattagggacggagggagta 80  Q
    |||||||||  ||||||||||||||||||||||||||    
T  7951598 tctcaaaagggtcttataattagggacggagggagta 7951562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 9020728 - 9020692
Alignment:
Q  46 tcaaaagaatcttataattagggacggagggagtatt 82  Q
    |||||||  ||||||||||||||||||||||||||||    
T  9020728 tcaaaagggtcttataattagggacggagggagtatt 9020692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 36177071 - 36177140
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||| ||||||||||||||||||||||||||    
T  36177071 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagagtcttataattagggacggagggagta 36177140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 2944238 - 2944309
Alignment:
Q  9 agcaaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  2944238 agcaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 2944309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 13153997 - 13153926
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||||    
T  13153997 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtatt 13153926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 34490586 - 34490515
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||||||||||||| ||        |||||||||  |||||||||||||||||||||||||||||    
T  34490586 caaaggggtcttataaaaagggacaaaaaaaattctcaaaaagatcttataattagggacggagggagtatt 34490515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 5774116 - 5774046
Alignment:
Q  12 aaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    |||||||||||||||||||| ||        ||||||||||| ||||||||||||||||||||| ||||||    
T  5774116 aaaggggtcttataaaaagggacaaaaaaaattctcaaaagagtcttataattagggacggaggtagtatt 5774046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 32675725 - 32675795
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||||||||||||| ||        ||||||||||  |||||||||||||||||||||||||||    
T  32675725 caaaggggtcttataaaaagggacaaatttttttctcaaaagggtcttataattagggacggagggagtat 32675795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 40529344 - 40529306
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  40529344 ttctcaaaaggatcttataattagggacggagggagtat 40529306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 43654203 - 43654241
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  43654203 ttctcaaaagagtcttataattagggacggagggagtat 43654241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 44748463 - 44748501
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  44748463 ttctcaaaagaatcttataattagggacggaggtagtat 44748501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 51063 - 51132
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  51063 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 51132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 14699521 - 14699452
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        |||||||||| |||||||||||||||||||||| ||||    
T  14699521 caaaggggtcttataaaaagggacaaaaaaaattctcaaaaggatcttataattagggacggaggaagta 14699452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 28192143 - 28192212
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  28192143 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 28192212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 41014573 - 41014504
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||||||         ||||||||  |||||||||||||||||||||||||||    
T  41014573 caaaggggtcttataaaaaggaacaaaaaaaaatctcaaaaagatcttataattagggacggagggagta 41014504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 44502656 - 44502620
Alignment:
Q  44 tctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||| |||||||||||||||||||||||||||    
T  44502656 tctcaaaaggatcttataattagggacggagggagta 44502620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 28572083 - 28572044
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  28572083 ttctcaaaagggtcttataattagggacggagggagtatt 28572044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 28579676 - 28579637
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  28579676 ttctcaaaagggtcttataattagggacggagggagtatt 28579637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 34568527 - 34568488
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  34568527 ttctcaaaagggtcttataattagggacggagggagtatt 34568488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 39029249 - 39029178
Alignment:
Q  9 agcaaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| | ||        ||||||||||  ||||||||||||||||||||||||||    
T  39029249 agcaaaggggtcttataaaaaaggacaaaaaattttctcaaaagggtcttataattagggacggagggagta 39029178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 41408271 - 41408314
Alignment:
Q  139 taactaacatcaattttacaaatttaattcaatcaaaatcaatt 182  Q
    ||||||| ||||||| |||||| |||||||||||||||||||||    
T  41408271 taactaaaatcaattctacaaaattaattcaatcaaaatcaatt 41408314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 8251933 - 8251971
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  8251933 ttctcaaaagggtcttataattagggacggagggagtat 8251971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 18754181 - 18754143
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  18754181 ttctcaaaagggtcttataattagggacggagggagtat 18754143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 1774379 - 1774342
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  1774379 ttctcaaaagggtcttataattagggacggagggagta 1774342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 7758909 - 7758946
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  7758909 ttctcaaaagtgtcttataattagggacggagggagta 7758946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 8951428 - 8951465
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  8951428 ttctcaaaagggtcttataattagggacggagggagta 8951465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 29970881 - 29970926
Alignment:
Q  137 tttaactaacatcaattttacaaatttaattcaatcaaaatcaatt 182  Q
    ||||||||| ||||||| |||||||| ||||| |||||||||||||    
T  29970881 tttaactaaaatcaattatacaaattcaattctatcaaaatcaatt 29970926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 33745895 - 33745932
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  33745895 ttctcaaaaggatcttataattaggaacggagggagta 33745932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 37023284 - 37023321
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  37023284 ttctcaaaagagtcttataattagggacggaggcagta 37023321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 15677771 - 15677739
Alignment:
Q  150 aattttacaaatttaattcaatcaaaatcaatt 182  Q
    ||||||| |||||||||||||||||||||||||    
T  15677771 aattttataaatttaattcaatcaaaatcaatt 15677739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 35179634 - 35179598
Alignment:
Q  46 tcaaaagaatcttataattagggacggagggagtatt 82  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  35179634 tcaaaagagtcttataattagggacggaggtagtatt 35179598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 4102680 - 4102752
Alignment:
Q  9 agcaaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||||||||||||||| ||        ||||||||||  |||||||||||||||||||||||||||    
T  4102680 agcaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtat 4102752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 11741466 - 11741395
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||||    
T  11741466 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtatt 11741395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 16576060 - 16576131
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||||||||||||| ||        || |||||||| ||||||||||||||||||||||||||||    
T  16576060 caaaggggtcttataaaaagggacaaaaaaaattatcaaaagagtcttataattagggacggagggagtatt 16576131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 37951917 - 37951988
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||||    
T  37951917 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtatt 37951988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 39497502 - 39497431
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||||    
T  39497502 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtatt 39497431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 45039481 - 45039411
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||||||||||||| ||        ||||||||||  |||||||||||||||||||||||||||    
T  45039481 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtat 45039411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 52431142 - 52431212
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||||||||||||| ||        ||||||||||  |||||||||||||||||||||||||||    
T  52431142 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtat 52431212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 1039349 - 1039418
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  1039349 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 1039418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 1046255 - 1046324
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  1046255 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 1046324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 15811200 - 15811269
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  15811200 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 15811269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 23542048 - 23541979
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  23542048 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 23541979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 36694923 - 36694854
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  36694923 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 36694854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 36711024 - 36710955
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  36711024 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 36710955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 49907090 - 49907021
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  49907090 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 49907021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 7784258 - 7784293
Alignment:
Q  47 caaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||| ||||||||||||||||||||||||||||    
T  7784258 caaaagagtcttataattagggacggagggagtatt 7784293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 18237131 - 18237092
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  18237131 ttctcaaaagagtcttataattagggacggaggtagtatt 18237092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 30289635 - 30289600
Alignment:
Q  47 caaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||| ||||||||||||||||||||||||||||    
T  30289635 caaaagagtcttataattagggacggagggagtatt 30289600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 30289831 - 30289898
Alignment:
Q  12 aaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagt 79  Q
    |||||||||||||||||||| ||        ||||||||||  |||||||||||||||||||||||||    
T  30289831 aaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagt 30289898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 50008012 - 50007973
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  50008012 ttctcaaaagagtcttataattagggacagagggagtatt 50007973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 50246929 - 50246968
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    |||||||||| |||||||||||| ||||||||||||||||    
T  50246929 ttctcaaaaggatcttataattacggacggagggagtatt 50246968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 22567103 - 22567065
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  22567103 ttctcaaaaggatcttataattagggacggaggtagtat 22567065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 50008483 - 50008521
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  50008483 ttctcaaaatgatcttataattagggacggagggagtat 50008521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 943637 - 943674
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  943637 ttctcaaaagggtcttataattagggacggagggagta 943674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 30290302 - 30290265
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  30290302 ttctcaaaagggtcttataattagggacggagggagta 30290265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 75
Target Start/End: Complemental strand, 34503269 - 34503240
Alignment:
Q  46 tcaaaagaatcttataattagggacggagg 75  Q
    ||||||||||||||||||||||||||||||    
T  34503269 tcaaaagaatcttataattagggacggagg 34503240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 39363194 - 39363231
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  39363194 ttctcaaaagggtcttataattagggacggagggagta 39363231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 44649666 - 44649629
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  44649666 ttctcaaaagggtcttataattagggacggagggagta 44649629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 46075867 - 46075904
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  46075867 ttctcaaaagggtcttataattagggacggagggagta 46075904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 45285810 - 45285842
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagg 75  Q
    ||||||||||| |||||||||||||||||||||    
T  45285810 ttctcaaaagagtcttataattagggacggagg 45285842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 25197189 - 25197150
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  25197189 ttctcaaaaggatcttataattagggacggagggagtatt 25197150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 25024509 - 25024543
Alignment:
Q  46 tcaaaagaatcttataattagggacggagggagta 80  Q
    |||||||||||||||||||||||||||||||||||    
T  25024509 tcaaaagaatcttataattagggacggagggagta 25024543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 34301800 - 34301869
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  34301800 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 34301869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 7772213 - 7772174
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  7772213 ttctcaaaagagtcttataattagggacggaggtagtatt 7772174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 1730104 - 1730138
Alignment:
Q  46 tcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||| |||||||||||||||||||||||||||    
T  1730104 tcaaaaggatcttataattagggacggagggagta 1730138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 4844437 - 4844399
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  4844437 ttctcaaaagggtcttataattagggacggagggagtat 4844399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 9341875 - 9341837
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  9341875 ttctcaaaaggatcttataattagggacggaggtagtat 9341837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 30248684 - 30248646
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  30248684 ttctcaaaagggtcttataattagggacggagggagtat 30248646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 231105 - 231142
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  231105 ttctcaaaagggtcttataattagggacggagggagta 231142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 1779817 - 1779784
Alignment:
Q  47 caaaagaatcttataattagggacggagggagta 80  Q
    |||||| |||||||||||||||||||||||||||    
T  1779817 caaaaggatcttataattagggacggagggagta 1779784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 8743225 - 8743188
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  8743225 ttctcaaaagggtcttataattagggacggagggagta 8743188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 29036163 - 29036126
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  29036163 ttctcaaaaggatcttataattaggaacggagggagta 29036126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 17610020 - 17610059
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  17610020 ttctcaaaaggatcttataattagggacggagggagtatt 17610059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 4035894 - 4035824
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||||||||||||| ||        ||||||||||  |||||||||||||||||||||||||||    
T  4035894 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtat 4035824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 4549857 - 4549923
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggaggga 77  Q
    |||| |||||||||||||||||||        ||||||||||| |||||||||||||||||||||||    
T  4549857 caaaagggtcttataaaaaggaacaaaaaaaattctcaaaagagtcttataattagggacggaggga 4549923  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 24754115 - 24754077
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  24754115 ttctcaaaaggatcttataattagggacggagggagtat 24754077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 5375525 - 5375594
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  5375525 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 5375594  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 5743627 - 5743696
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  5743627 caaaggggtcttataaaaagggacaaatttttttctcaaaagggtcttataattagggacggagggagta 5743696  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 6462691 - 6462728
Alignment:
Q  44 tctcaaaagaatcttataattagggacggagggagtat 81  Q
    |||||||||||||||||||||||||||||||| |||||    
T  6462691 tctcaaaagaatcttataattagggacggaggtagtat 6462728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 6753562 - 6753525
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    |||||||||| |||||||||||||||||||||||||||    
T  6753562 ttctcaaaaggatcttataattagggacggagggagta 6753525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 15241517 - 15241480
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  15241517 ttctcaaaagagtcttataattagggacggagggagta 15241480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 34273187 - 34273256
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  34273187 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 34273256  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 39144473 - 39144404
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    |||||| |||||||||||||||||        |||| ||||| |||||||||||||||||||||||||||    
T  39144473 caaaggagtcttataaaaaggaacaaaaaaaattcttaaaaggatcttataattagggacggagggagta 39144404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 47806929 - 47806860
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  47806929 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 47806860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 50352133 - 50352064
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        |||||||||| ||||||||||||| |||||||||||||    
T  50352133 caaaggggtcttataaaaagggacaaaaaaaattctcaaaaggatcttataattagagacggagggagta 50352064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 55632227 - 55632296
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        |||||||||| ||||||||||||| |||||||||||||    
T  55632227 caaaggggtcttataaaaagggacaaaaaaaattctcaaaaggatcttataattagagacggagggagta 55632296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 26625968 - 26626039
Alignment:
Q  9 agcaaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||||| ||         |||||||||  ||||||||||||||||||||||||||    
T  26625968 agcaaaggggtcttataaaaagggacaaaaaaaaatctcaaaagggtcttataattagggacggagggagta 26626039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 28298371 - 28298410
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  28298371 ttctcaaaaggatcttataattagggacggaggtagtatt 28298410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 30050052 - 30050123
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||||||||||||| ||        || |||||||| ||||||||||||||||||||| ||||||    
T  30050052 caaaggggtcttataaaaagggaccaaattttttttcaaaagagtcttataattagggacggaggtagtatt 30050123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 45742806 - 45742845
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  45742806 ttctcaaaagggtcttataattagggacggagggagtatt 45742845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 4455130 - 4455060
Alignment:
Q  11 caaaggggtcttataaaaagg-aacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| |||        ||||||||||| ||||||||||||||||||| ||||||    
T  4455130 caaaggggtcttataaaaagggaacaaaaaaaattctcaaaagagtcttataattagggacggatggagta 4455060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 20747207 - 20747173
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggaggga 77  Q
    |||||||| ||||||||||||||||||||||||||    
T  20747207 ttctcaaaggaatcttataattagggacggaggga 20747173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 9328240 - 9328277
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  9328240 ttctcaaaagggtcttataattagggacggagggagta 9328277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 10588112 - 10588075
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    |||||||||| || ||||||||||||||||||||||||    
T  10588112 ttctcaaaaggatgttataattagggacggagggagta 10588075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 19282081 - 19282118
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  19282081 ttctcaaaaggatcttataattagggacgtagggagta 19282118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 30771565 - 30771528
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  30771565 ttctcaaaagggtcttataattagggacggagggagta 30771528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 32032993 - 32033030
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  32032993 ttctcaaaagggtcttataattagggacggagggagta 32033030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 33413555 - 33413518
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  33413555 ttctcaaaagggtcttataattagggacggagggagta 33413518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 44294826 - 44294789
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  44294826 ttctcaaaagggtcttataattagggacggagggagta 44294789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 73
Target Start/End: Original strand, 49490169 - 49490198
Alignment:
Q  44 tctcaaaagaatcttataattagggacgga 73  Q
    ||||||||||||||||||||||||||||||    
T  49490169 tctcaaaagaatcttataattagggacgga 49490198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 50533921 - 50533884
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    |||||||||  |||||||||||||||||||||||||||    
T  50533921 ttctcaaaatgatcttataattagggacggagggagta 50533884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 52978019 - 52977982
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  52978019 ttctcaaaagggtcttataattagggacggagggagta 52977982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 26889902 - 26889938
Alignment:
Q  46 tcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  26889902 tcaaaaggatcttataattagggacggaggtagtatt 26889938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 36901111 - 36901147
Alignment:
Q  44 tctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  36901111 tctcaaaaggatcttataattagggacggaggtagta 36901147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 54623838 - 54623806
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagg 75  Q
    |||||||||| ||||||||||||||||||||||    
T  54623838 ttctcaaaaggatcttataattagggacggagg 54623806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0457 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 4663 - 4700
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  4663 ttctcaaaagaatcttataattagggacggaggtagta 4700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 117915 - 117846
Alignment:
Q  11 caaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||| ||        |||||||||| |||||||||||||||||||||| ||||    
T  117915 caaaggggtcttataaaaagggacaaaaaaaattctcaaaaggatcttataattagggacggaggaagta 117846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 9426 - 9465
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  9426 ttctcaaaaggatcttataattagggacggaggtagtatt 9465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 259122 - 259161
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtatt 82  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  259122 ttctcaaaagggtcttataattagggacggagggagtatt 259161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 3749 - 3819
Alignment:
Q  9 agcaaaggggtcttataaaaaggaacnnnnnnnnttctcaaaagaatcttataattagggacggagggagta 80  Q
    ||||||||||||||||||||||| ||        ||||||||||  ||||||||||||||||||||||||||    
T  3749 agcaaaggggtcttataaaaagggacaaaaaaa-ttctcaaaagggtcttataattagggacggagggagta 3819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 12102 - 12064
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  12102 ttctcaaaagggtcttataattagggacggagggagtat 12064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 24630 - 24668
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  24630 ttctcaaaaggatcttataattaggaacggagggagtat 24668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 51682 - 51720
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  51682 ttctcaaaagggtcttataattagggacggagggagtat 51720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 47677 - 47639
Alignment:
Q  43 ttctcaaaagaatcttataattagggacggagggagtat 81  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  47677 ttctcaaaagggtcttataattagggacggagggagtat 47639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 47904 - 47937
Alignment:
Q  47 caaaagaatcttataattagggacggagggagta 80  Q
    |||||| |||||||||||||||||||||||||||    
T  47904 caaaaggatcttataattagggacggagggagta 47937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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