View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14617_low_1 (Length: 425)
Name: NF14617_low_1
Description: NF14617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14617_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 408
Target Start/End: Complemental strand, 26877416 - 26877025
Alignment:
| Q |
17 |
cacagacacgtacaccggactcaacaatggcattgatttgttgacagcggtagtaatttgagaatataaaatatttgattgtgatcacaattgtcggtaa |
116 |
Q |
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| T |
26877416 |
cacagacacgtacaccggactcaacaatggcattgatttgttgacagcggtagtaatttgagaatataaaatatttgattatgatcacaattgtaggtaa |
26877317 |
T |
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| Q |
117 |
cgtacatggacacatgtcgaacagcaaacacaacttcgatcatgctgcaaattaaacatccatcacagtaaattcagacaatattttgaactgcacaaac |
216 |
Q |
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| T |
26877316 |
cggacatggacacatgtcgaacaccaaacacaacttcgatcatgctgcaaattaaacatccatcacagtaaattcagacaatattttgaactgcacaaac |
26877217 |
T |
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| Q |
217 |
atcatccacttacagaatcacaaacatgcaatcttgagattgtggagtaagcttcctcttattgagagaacaacaacaagacagttaactttatgattat |
316 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26877216 |
atcattcacttacagaatcacaaacatgcaatcttgagattgtggagtaagcttcctcttattgagagaacaacaacaagacagttaactttatgattat |
26877117 |
T |
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| Q |
317 |
ccttttcttttcttttcttgcacccacgaaaagtctcacgtcctcaaatattcatctagctttctctttttcatataaggattggtgaatat |
408 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26877116 |
ccttttcttttctcttcttgcacccacgaaaagtctcacgtcctcaaatattcatctagctttctctttttcatataaggattggtgaatat |
26877025 |
T |
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