View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14618_high_1 (Length: 520)
Name: NF14618_high_1
Description: NF14618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14618_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 11668077 - 11667576
Alignment:
| Q |
1 |
aaggggtagggtaatcatgtgaaggagtaggtgtagaaggggtaggataatcatgtgaaggattatttgtgcccccaacacaaataggtttgcaagaggc |
100 |
Q |
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| T |
11668077 |
aaggggtagggtaatcatgtgaaggagtaggtgtagaaggggtaggataatcatgtgaaggattatttgtgcccccaacacaaataggtttgcaagaggc |
11667978 |
T |
|
| Q |
101 |
acactccacagtacaatcattagggcaaaacttagggcatacatgaaccaaattatagcaatgtttgtatttctttatcttgcagcttgcatggccatat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11667977 |
acactccacagtacaatcattagggcaaaacttagggcatacatgaaccaaattatagcaatgtttgtatttctttatcttacagcttgcatggccatac |
11667878 |
T |
|
| Q |
201 |
tcatgatctttagcaattccaggaggagtagctgcttccactgccactagtacaagcaagattgacaccaaaacttgaaccattatttgagccattattg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11667877 |
tcatgatctttagcaattccaggaggagtagctgcttccactgccactagcacaagcaagattgacaccaaaacttgaaccattatttgagccattattg |
11667778 |
T |
|
| Q |
301 |
aaagtattatctagctctttagattcaaatagttatttgtttgatgagtttgaataacttgccaagagcattgccttttataggcatgaagagaatctat |
400 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11667777 |
aaagtattatctagctctttagattgaaatagttatttttttgatgagtttgaataacttgccaagagcattgccttttataggcatgaagagaatctat |
11667678 |
T |
|
| Q |
401 |
catgacgtgaagaagctatacacgtggctaaaaacagcatattttcacatggttattccttcagatactaatttagttgaagtcactttcttttgactat |
500 |
Q |
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| T |
11667677 |
catgacgtgaagaagctatacacgtggctaaaaacagcatattttcacatggttattccttcaaatactaatttagttgaagtcactttcttttgactat |
11667578 |
T |
|
| Q |
501 |
ac |
502 |
Q |
| |
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|| |
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|
| T |
11667577 |
ac |
11667576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 11654312 - 11653909
Alignment:
| Q |
1 |
aaggggtagggtaatcatgtgaaggagtaggtgtagaaggggtaggataatcatgtgaaggattatttgtgcccccaacacaaataggtttgcaagaggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11654312 |
aaggggtagggtaatcatgtgaaggagtaggtgtagaaggggtaggataatcatgtgaaggattatttgtgcccccaacacaaataggtttgcaagaggc |
11654213 |
T |
|
| Q |
101 |
acactccacagtacaatcattagggcaaaacttagggcatacatgaaccaaattatagcaatgtttgtatttctttatcttgcagcttgcatggccatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11654212 |
acactccacagtacaatcattagggcaaaacttagggcatacatgaaccaaattatagcaatgtttgtatttctttatcttgcagcttgcatggccatat |
11654113 |
T |
|
| Q |
201 |
tcatgatctttagcaattccaggaggagtagctgcttccactgccactagtacaagcaagattgacaccaaaacttgaaccattatttgagccattattg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11654112 |
tcatgatctttagcaattccaggaggagtagctgcttccactgccactagcacaagcaagattgacaccaaaacttgaaccattatttgagcc---attg |
11654016 |
T |
|
| Q |
301 |
aaagtattatctagctctttagattcaaatagttatttg-tttgatgagtttgaataacttgccaagagcattgccttttataggcatgaagagaatcta |
399 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11654015 |
aaagtattatctagctctttagattcaaatagttatttgttttaatgagtttgaataacttgccaagagcattgccttttataggcatgaagagaatcta |
11653916 |
T |
|
| Q |
400 |
tcatgac |
406 |
Q |
| |
|
||||||| |
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|
| T |
11653915 |
tcatgac |
11653909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 81 - 422
Target Start/End: Complemental strand, 11663612 - 11663266
Alignment:
| Q |
81 |
caaataggtttgcaagaggcacactccacagtacaatcattagggcaaaacttagggcatacatgaaccaaattatagcaatgtttgtatttctttatct |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| |||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
11663612 |
caaataggtttgcaagaggcacactccacagtacaatcataaggacaagacttaggacatacatgaaccgaattatagcaatgtttgtacttctttatct |
11663513 |
T |
|
| Q |
181 |
tgcagcttgcatggccatattcatgatctttagcaattccaggaggagtagctgcttccactgccactagtacaagcaagattgacaccaaaacttgaac |
280 |
Q |
| |
|
||||| |||||| |||| || || |||||||| ||||||||||| |||||||||||||||||| ||| |||||||| ||||||||||||| |||||| |
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| T |
11663512 |
tgcaggttgcataaccattcccacgacctttagcatttccaggaggactagctgcttccactgccattagcacaagcaaaattgacaccaaaatttgaac |
11663413 |
T |
|
| Q |
281 |
cattatttgagccattattgaaagtattatctag-ctctttagattcaaatagttatt------tgtttgatgagtttgaataacttgccaagagcattg |
373 |
Q |
| |
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| ||||| |||| ||||||| ||| ||||| | ||| ||||||| || |||| |||| |||||| ||||||| | ||||||||||| |
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| T |
11663412 |
taatattttagcc---attgaaataattttctagtttttttttattcaaacagatattggaaactgttgaatgagtgagaataacattgcaagagcattg |
11663316 |
T |
|
| Q |
374 |
ccttttataggcat-gaagagaatctatcatgacgtgaagaagctataca |
422 |
Q |
| |
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|||||||||||||| || |||| | ||||||||| ||||||||||||||| |
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| T |
11663315 |
ccttttataggcatagaggagagtatatcatgacatgaagaagctataca |
11663266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 81 - 422
Target Start/End: Original strand, 7344855 - 7345203
Alignment:
| Q |
81 |
caaataggtttgcaagaggcacactccacagtacaatcattagggcaaaacttagggcatacatgaaccaaattatagcaatgtttgtatttctttatct |
180 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| ||||||| ||| ||| ||||||| ||| ||||||||| |||||||||||||||||| |||||||||| |
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|
| T |
7344855 |
caaattggtttgcaagaagcacactccacagtgcaatcataaggacaagacttaggacatgcatgaaccatattatagcaatgtttgtacttctttatct |
7344954 |
T |
|
| Q |
181 |
tgcagcttgcatggccatattcatgatctttagcaattccaggaggagtagctgcttccactgccactagtaca---agcaagattgacaccaaaacttg |
277 |
Q |
| |
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|||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||| || | |||||||||||| ||| |
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|
| T |
7344955 |
tgcagcttgcataaccatgctcacgatctttagcaattccaggaggagtagctgcttccactgccactagcacaaggagaattattgacaccaaagtttg |
7345054 |
T |
|
| Q |
278 |
aaccattatttgagccattattgaaagtattatctagctctttagattcaaatagttatt------tgtttgatgagtttgaataacttgccaagagcat |
371 |
Q |
| |
|
|||||||| || |||| ||||||| |||| ||||| | ||| ||||||| || |||| |||| |||||| ||||||| ||||||||| |
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|
| T |
7345055 |
aaccattaatttagcc---attgaaaatattttctagttttttttattcaaacagatattggaaactgttgaatgagtgagaataacaatgcaagagcat |
7345151 |
T |
|
| Q |
372 |
tgccttttataggcat-gaagagaatctatcatgacgtgaagaagctataca |
422 |
Q |
| |
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|||||||||| ||||| ||||||||||||| |||| ||||||||||||||| |
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| T |
7345152 |
tgccttttattggcatagaagagaatctattgtgacatgaagaagctataca |
7345203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 435 - 480
Target Start/End: Original strand, 7345256 - 7345301
Alignment:
| Q |
435 |
cagcatattttcacatggttattccttcagatactaatttagttga |
480 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
7345256 |
cagcatattttcacatggttattccttaagatataaatttagttga |
7345301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 435 - 480
Target Start/End: Complemental strand, 11663213 - 11663168
Alignment:
| Q |
435 |
cagcatattttcacatggttattccttcagatactaatttagttga |
480 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
11663213 |
cagcatattttcacatggttattccttaagatataaatttagttga |
11663168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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