View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14618_high_11 (Length: 221)
Name: NF14618_high_11
Description: NF14618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14618_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 2799195 - 2799384
Alignment:
| Q |
18 |
tgtggcgcaactgtttgaagctggttggattcaggtctgtgttttaagtagttccatgtgctacagagttacgttgttagctcatttggttgttgtgatg |
117 |
Q |
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| T |
2799195 |
tgtggcgcaactatttgaagctggttggattcaggtctgtgttttaagtagttccatgtgctacatagttactttgttagctcatttggttgttgtgatg |
2799294 |
T |
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| Q |
118 |
ggcacacaatactatgatggggggaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttg |
207 |
Q |
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| T |
2799295 |
ggcacactttactatgatggggagaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttg |
2799384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 1681530 - 1681344
Alignment:
| Q |
21 |
ggcgcaactgtttgaagctggttggattcaggtctgtgttttaagtagttccatgtgctacagagttacgttgttagctcatttggttgttgtgatgggc |
120 |
Q |
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| T |
1681530 |
ggcgcaactatttgaagctggttggattcaggactgtgttttaagtagttccatgtgctacaaagatacattgttagctcatttggttgttgtgatgggc |
1681431 |
T |
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| Q |
121 |
acacaatactatgatggggggaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttg |
207 |
Q |
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| T |
1681430 |
acacaatactatgatggggagaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttg |
1681344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 206
Target Start/End: Original strand, 29268381 - 29268559
Alignment:
| Q |
31 |
tttgaagctggttggattcaggtctgtgttttaagtagttccatgtgctacagagttacgttgttagctcatttggttgttgtgatgggcacacaatact |
130 |
Q |
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| T |
29268381 |
tttgaggctggatggattcaggtctgcgttttaagcagttccatgtgctggggagtgacattgtcggctcatttggtagttgtgatgggcacacaatatt |
29268480 |
T |
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| Q |
131 |
atgatggg---gggaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtccttt |
206 |
Q |
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| T |
29268481 |
atgatgggagagagaatgcccagacagattaccctgttactgatttgctgcaaatgatgggtcatgccagccgtccttt |
29268559 |
T |
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