View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14618_high_12 (Length: 216)
Name: NF14618_high_12
Description: NF14618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14618_high_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 47599044 - 47599255
Alignment:
| Q |
5 |
acaataggaccattttcttttttattaacaagataatacatcaacttcacagaatatgattcctatggtgtgacatcaaccatgtttccactattgttaa |
104 |
Q |
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| T |
47599044 |
acaataggaccattttctttttcattaacaagataatacatcagcttcacaggatatgattcccatggtgtgacatcaaccatgtttccactattgttaa |
47599143 |
T |
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| Q |
105 |
aatttaaaaataatatgtttccactacaataagaaatgcattatagaaggttaaccagattgaaaaataaaatacgatgatcaatgtacgataatactta |
204 |
Q |
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| T |
47599144 |
aatttaaaaataatatgtttccactacaataagaaatgcattatagaaggttaaccagattgaaaaataaaatacgatgatcaatgtacgataatactta |
47599243 |
T |
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| Q |
205 |
tgttctttgttt |
216 |
Q |
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| T |
47599244 |
tattctttgttt |
47599255 |
T |
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