View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14618_high_6 (Length: 351)
Name: NF14618_high_6
Description: NF14618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14618_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 49858615 - 49858950
Alignment:
| Q |
18 |
atatatggcttaattgatgaacattgtgtaatttgnnnnnnn---atttatcattgtagatcactacaaacaactattcggtttacgcccgggatggctc |
114 |
Q |
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| T |
49858615 |
atatatggcttaattgatgaacattgtgtaatttgttttttatttatttatcgttgtagatcactacaaacaactattcggtttacgcccgggatggctc |
49858714 |
T |
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| Q |
115 |
atacctaatcacctcaatgtatgattgtgctctttctatccttatgaccatttctttgtaagtatttcagcagttagtttcattgcttttgcatttt--- |
211 |
Q |
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| T |
49858715 |
atacctaatcacctcaatgtatgattgtgctctttctatccttatgaccatttctttgtaagtatttcagcagttagtttcattgcttttgcattttatt |
49858814 |
T |
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| Q |
212 |
--------attgcatttcctattctgtttgttatttgtaaaggatgtctcagatgctcaatggaggaattttcgaggaaatttacctgttcttacacttg |
303 |
Q |
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| T |
49858815 |
gctgattaattgcatttcctattctgtttgttatttgtaaaggatgtctcagatgctcaatggaggaattttcgaggaaatttacctgttcttacacttg |
49858914 |
T |
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| Q |
304 |
tctttggaatttttactcttctggccaatttgatga |
339 |
Q |
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| T |
49858915 |
tctttggaatttttactcttctggccaatttgatga |
49858950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 212 - 339
Target Start/End: Complemental strand, 38456295 - 38456168
Alignment:
| Q |
212 |
attgcatttcctattctgtttgttatttgtaaaggatgtctcagatgctcaatggaggaattttcgaggaaatttacctgttcttacacttgtctttgga |
311 |
Q |
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| T |
38456295 |
attgcatttcctattctgtttgttatgtgtaaaggatgtctcagatgctcggtggaggaattttcgaggaaatttacctgttcttacactcgtctttcta |
38456196 |
T |
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| Q |
312 |
atttttactcttctggccaatttgatga |
339 |
Q |
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| T |
38456195 |
atttttacacttatggcccatttgatga |
38456168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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