View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14618_low_1 (Length: 573)

Name: NF14618_low_1
Description: NF14618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14618_low_1
NF14618_low_1
[»] chr8 (12 HSPs)
chr8 (175-555)||(26872395-26872771)
chr8 (175-294)||(26875110-26875229)
chr8 (18-111)||(26875294-26875387)
chr8 (242-355)||(17663566-17663675)
chr8 (242-355)||(17682722-17682831)
chr8 (18-111)||(26872836-26872929)
chr8 (221-325)||(4838680-4838781)
chr8 (243-284)||(36577971-36578012)
chr8 (243-284)||(4836509-4836550)
chr8 (243-284)||(4841954-4841995)
chr8 (221-278)||(23091540-23091597)
chr8 (243-284)||(2750241-2750282)
[»] scaffold1896 (2 HSPs)
scaffold1896 (175-360)||(373-555)
scaffold1896 (18-111)||(216-309)
[»] chr4 (16 HSPs)
chr4 (175-324)||(12997467-12997613)
chr4 (18-111)||(12997311-12997404)
chr4 (195-309)||(24923243-24923357)
chr4 (195-306)||(17141824-17141935)
chr4 (243-287)||(4749044-4749088)
chr4 (243-306)||(32215929-32215992)
chr4 (221-306)||(52296716-52296800)
chr4 (244-286)||(772287-772329)
chr4 (244-286)||(20866841-20866883)
chr4 (242-287)||(5405293-5405338)
chr4 (243-276)||(638076-638109)
chr4 (242-287)||(17008297-17008342)
chr4 (242-287)||(17022261-17022306)
chr4 (242-287)||(21531355-21531399)
chr4 (254-306)||(48077653-48077705)
chr4 (243-284)||(26447220-26447261)
[»] chr2 (25 HSPs)
chr2 (175-325)||(20622390-20622537)
chr2 (18-111)||(20622234-20622327)
chr2 (242-325)||(17686342-17686422)
chr2 (242-306)||(21851519-21851582)
chr2 (242-306)||(21859954-21860017)
chr2 (242-306)||(33308165-33308229)
chr2 (242-309)||(44373740-44373806)
chr2 (242-309)||(44389651-44389717)
chr2 (195-309)||(28479888-28480002)
chr2 (219-287)||(34543045-34543113)
chr2 (243-306)||(22186090-22186152)
chr2 (242-285)||(25262592-25262635)
chr2 (195-287)||(21149978-21150070)
chr2 (245-284)||(21322005-21322044)
chr2 (221-284)||(39756276-39756339)
chr2 (243-285)||(27425289-27425331)
chr2 (243-285)||(27440335-27440377)
chr2 (249-287)||(34529071-34529109)
chr2 (242-287)||(26718655-26718699)
chr2 (242-287)||(26732843-26732887)
chr2 (243-279)||(25193113-25193149)
chr2 (251-286)||(4281573-4281608)
chr2 (246-280)||(25995531-25995565)
chr2 (242-284)||(35038869-35038910)
chr2 (242-283)||(27605541-27605582)
[»] chr5 (16 HSPs)
chr5 (175-325)||(31422654-31422801)
chr5 (233-355)||(31411804-31411923)
chr5 (18-111)||(31411623-31411716)
chr5 (18-111)||(31422501-31422591)
chr5 (242-306)||(31549514-31549577)
chr5 (242-309)||(29185243-29185310)
chr5 (195-283)||(29189206-29189294)
chr5 (243-306)||(23568473-23568535)
chr5 (195-285)||(24693919-24694009)
chr5 (195-285)||(24611487-24611577)
chr5 (243-284)||(2826874-2826915)
chr5 (246-306)||(8949114-8949174)
chr5 (242-284)||(20371908-20371949)
chr5 (242-284)||(20397632-20397673)
chr5 (221-286)||(41669276-41669341)
chr5 (221-286)||(41684083-41684148)
[»] scaffold1487 (1 HSPs)
scaffold1487 (18-111)||(43-136)
[»] chr6 (21 HSPs)
chr6 (227-306)||(5995676-5995755)
chr6 (195-287)||(3042353-3042445)
chr6 (195-286)||(20215977-20216068)
chr6 (195-286)||(22109998-22110089)
chr6 (242-287)||(30996948-30996993)
chr6 (242-286)||(27048675-27048719)
chr6 (242-286)||(27058919-27058963)
chr6 (195-286)||(16587761-16587852)
chr6 (195-286)||(16607528-16607619)
chr6 (195-286)||(24919129-24919220)
chr6 (195-286)||(17092468-17092559)
chr6 (244-286)||(5488166-5488208)
chr6 (224-286)||(24296429-24296491)
chr6 (224-286)||(24310460-24310522)
chr6 (242-282)||(15390685-15390725)
chr6 (245-284)||(1141767-1141806)
chr6 (195-285)||(13289784-13289874)
chr6 (195-285)||(13304751-13304841)
chr6 (242-287)||(19827582-19827626)
chr6 (243-284)||(877419-877460)
chr6 (255-306)||(18611414-18611465)
[»] scaffold0027 (1 HSPs)
scaffold0027 (180-325)||(64635-64777)
[»] chr3 (24 HSPs)
chr3 (195-309)||(16289505-16289619)
chr3 (195-285)||(2216562-2216652)
chr3 (195-286)||(4444307-4444398)
chr3 (242-286)||(1005747-1005791)
chr3 (195-287)||(11262286-11262379)
chr3 (246-306)||(4504911-4504970)
chr3 (242-287)||(1775839-1775884)
chr3 (242-287)||(4887692-4887737)
chr3 (242-287)||(5517766-5517811)
chr3 (243-284)||(52987458-52987499)
chr3 (242-281)||(13603387-13603426)
chr3 (242-284)||(18954624-18954665)
chr3 (245-287)||(20053181-20053223)
chr3 (245-287)||(20075841-20075883)
chr3 (242-287)||(27551887-27551931)
chr3 (242-287)||(28469260-28469304)
chr3 (195-286)||(22876709-22876800)
chr3 (195-286)||(22891769-22891860)
chr3 (252-306)||(23755524-23755578)
chr3 (343-373)||(9184831-9184861)
chr3 (242-284)||(9184899-9184940)
chr3 (243-281)||(31852325-31852363)
chr3 (243-284)||(50754220-50754261)
chr3 (195-286)||(22861550-22861641)
[»] scaffold1120 (1 HSPs)
scaffold1120 (242-309)||(395-462)
[»] scaffold0609 (1 HSPs)
scaffold0609 (195-306)||(2483-2594)
[»] scaffold0206 (1 HSPs)
scaffold0206 (195-309)||(19468-19582)
[»] chr7 (19 HSPs)
chr7 (242-287)||(17515789-17515834)
chr7 (242-287)||(17537380-17537425)
chr7 (242-306)||(559863-559927)
chr7 (242-306)||(569772-569836)
chr7 (242-286)||(27967386-27967430)
chr7 (242-286)||(27976839-27976883)
chr7 (242-286)||(38411785-38411829)
chr7 (242-285)||(5200600-5200643)
chr7 (242-285)||(5209729-5209772)
chr7 (243-284)||(15974744-15974785)
chr7 (221-285)||(4185162-4185226)
chr7 (195-285)||(13737297-13737387)
chr7 (254-306)||(16911174-16911225)
chr7 (246-309)||(16544220-16544283)
chr7 (246-309)||(16621379-16621442)
chr7 (242-287)||(1887938-1887982)
chr7 (242-287)||(1902039-1902083)
chr7 (242-279)||(16474424-16474461)
chr7 (242-287)||(24187137-24187181)
[»] chr1 (7 HSPs)
chr1 (242-287)||(18750205-18750250)
chr1 (243-286)||(13463836-13463879)
chr1 (221-285)||(18597075-18597139)
chr1 (245-284)||(3650803-3650842)
chr1 (243-281)||(179827-179865)
chr1 (243-284)||(8402117-8402158)
chr1 (252-286)||(35197953-35197987)
[»] scaffold0669 (1 HSPs)
scaffold0669 (243-306)||(6011-6074)
[»] scaffold0016 (1 HSPs)
scaffold0016 (242-283)||(24495-24536)
[»] scaffold2141 (1 HSPs)
scaffold2141 (245-284)||(158-197)
[»] scaffold0497 (1 HSPs)
scaffold0497 (341-373)||(11927-11959)
[»] scaffold0001 (1 HSPs)
scaffold0001 (317-353)||(47854-47890)
[»] scaffold0853 (1 HSPs)
scaffold0853 (243-306)||(4271-4334)
[»] scaffold0703 (1 HSPs)
scaffold0703 (316-351)||(6739-6774)


Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 175 - 555
Target Start/End: Complemental strand, 26872771 - 26872395
Alignment:
Q  175 aagaattgaaaccagcatgcaaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccac 274  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26872771 aagaattgaaaccagcacgcaaaaggatgtttaaaactacaagaaattttttaatcggagtaagtttgaactccggcgcggtggtgccaccaccggccac 26872672  T
Q  275 cgcgccggaaaacactatctcgccggagaagatgatgatataagggggcggctgtttgttttgttaagagagaagtgagaacaattgtttagagagagag 374  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26872671 cgcgccggaaaacactatctcgccggagaagatgat---ataagggggcggctgtttgttttgttaagagagaagtgagaacaattgtttagagagaga- 26872576  T
Q  375 aagataaatgttttatgtgtgnnnnnnngctgagatttgatttt-atactcctttttgtttgaacaatcacatgcacctccttgtttctattatcatgta 473  Q
     ||| ||||||||||||||||       ||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26872575 -agagaaatgttttatgtgtgtttttttgctgatatttgatttttatactcctttttgtttgaacaatcacgtgcacctccttgtttctattatcatgta 26872477  T
Q  474 cctattttgttggagccgttggatctacgatctgacggtccttgcttcactgtcattttatcccttttttagtgtttactct 555  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26872476 cctattttgttggaaccgttggatctacgatctgacggtccctgcttcactgtcattttatcccttttttagtgtttactct 26872395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 175 - 294
Target Start/End: Complemental strand, 26875229 - 26875110
Alignment:
Q  175 aagaattgaaaccagcatgcaaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccac 274  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26875229 aagaattgaaaccagcacgcaaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttgaactccggcgcggtggtgccaccaccggccac 26875130  T
Q  275 cgcgccggaaaacactatct 294  Q
    |||| |||||||||||||||    
T  26875129 cgcgtcggaaaacactatct 26875110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 26875387 - 26875294
Alignment:
Q  18 aatacataccgagccaaaccgaatctgaaccgtacaggaagaggtaagccaaaccggtacgagaagtaacaaagggtaagagttttgttcatcc 111  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26875387 aatacataccgagccaaaccggatctgaaccgtagaggaagaggtaagccgaaccggtacgagaagtaacaaagggtaagagttttgttcatcc 26875294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 242 - 355
Target Start/End: Complemental strand, 17663675 - 17663566
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaagatgatgatataagggggcggctgtttgttttgttaa 341  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||| |    
T  17663675 aaactccggcacggtggtgc-accaccggccaccgcgccggaaaacactgtctcgccggagaaga---tgatataagggggcggctgtttgttttgttga 17663580  T
Q  342 gagagaagtgagaa 355  Q
    ||||||||||||||    
T  17663579 gagagaagtgagaa 17663566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 242 - 355
Target Start/End: Complemental strand, 17682831 - 17682722
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaagatgatgatataagggggcggctgtttgttttgttaa 341  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||| |    
T  17682831 aaactccggcacggtggtgc-accaccggccaccgcgccggaaaacactgtctcgccggagaaga---tgatataagggggcggctgtttgttttgttga 17682736  T
Q  342 gagagaagtgagaa 355  Q
    ||||||||||||||    
T  17682735 gagagaagtgagaa 17682722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 26872929 - 26872836
Alignment:
Q  18 aatacataccgagccaaaccgaatctgaaccgtacaggaagaggtaagccaaaccggtacgagaagtaacaaagggtaagagttttgttcatcc 111  Q
    ||||||||||||||||||||| ||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26872929 aatacataccgagccaaaccggatctgaatcgtagaggaagaggtaagccgaaccggtacgagaagtaacaaagggtaagagttttgttcatcc 26872836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 221 - 325
Target Start/End: Complemental strand, 4838781 - 4838680
Alignment:
Q  221 tttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaagatgatgatataaggg 320  Q
    |||||||||||| | |  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  4838781 tttttgaatcggcggagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaaga---tgatataaggg 4838685  T
Q  321 ggcgg 325  Q
    |||||    
T  4838684 ggcgg 4838680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 36578012 - 36577971
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccgcgccggaa 284  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  36578012 aactccggcgcggtggtgccaccaccggccaccgcgccggaa 36577971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 4836509 - 4836550
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccgcgccggaa 284  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  4836509 aactccggcgcggtggtgccaccaccggccaccacgccggaa 4836550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 4841954 - 4841995
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccgcgccggaa 284  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  4841954 aactccggcgcggtggtgccaccaccggccaccacgccggaa 4841995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 23091540 - 23091597
Alignment:
Q  221 tttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcg 278  Q
    |||| ||||||||| |  || |||||||||||||||||||||||||||||||||||||    
T  23091540 ttttggaatcggaggagtttaaaactccggcgcggtggtgccaccaccggccaccgcg 23091597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 2750282 - 2750241
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccgcgccggaa 284  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  2750282 aactccggcgcggtggttccaccaccggccaccgcgctggaa 2750241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1896 (Bit Score: 160; Significance: 5e-85; HSPs: 2)
Name: scaffold1896
Description:

Target: scaffold1896; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 175 - 360
Target Start/End: Original strand, 373 - 555
Alignment:
Q  175 aagaattgaaaccagcatgcaaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccac 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||    
T  373 aagaattgaaaccagcatgcaaaaggatgtttaaaactacaagaaatttttgaatcggagcaagtttgaactccggcgcggtggtgccactaccggccac 472  T
Q  275 cgcgccggaaaacactatctcgccggagaagatgatgatataagggggcggctgtttgttttgttaagagagaagtgagaacaatt 360  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  473 cgcgccggaaaacactatctcgccggagaa---gatgatataagggggcggctgtttgttttgttaagagagaagtgagaacaatt 555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1896; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 216 - 309
Alignment:
Q  18 aatacataccgagccaaaccgaatctgaaccgtacaggaagaggtaagccaaaccggtacgagaagtaacaaagggtaagagttttgttcatcc 111  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  216 aatacataccgagccaaaccggatctgaaccgtagaggaagaggtaagctgaaccggtacgagaagtaacaaagggtaagagttttgttcatcc 309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 7e-66; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 175 - 324
Target Start/End: Original strand, 12997467 - 12997613
Alignment:
Q  175 aagaattgaaaccagcatgcaaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccac 274  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12997467 aagaattgaaaccagcatgcaaaaggatgttcaaaactacaagaaatttttgaatcggagtaagtttgaactccggcgcggtggtgccaccaccggccac 12997566  T
Q  275 cgcgccggaaaacactatctcgccggagaagatgatgatataagggggcg 324  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||    
T  12997567 cgcgccggaaaacactatctcgccggagaagatg---atataagggggcg 12997613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 12997311 - 12997404
Alignment:
Q  18 aatacataccgagccaaaccgaatctgaaccgtacaggaagaggtaagccaaaccggtacgagaagtaacaaagggtaagagttttgttcatcc 111  Q
    ||||||||||||||||||| | |||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  12997311 aatacataccgagccaaactggatctgaaccgtagaggaagaggtaagccgaaccggtacgaaaagtaacaaagggtaagagttttgttcatcc 12997404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 195 - 309
Target Start/End: Original strand, 24923243 - 24923357
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatct 294  Q
    |||||||||||||||| |  || || |||||||||||||| |  || |||||||||||||||||  |||||||||||||| ||||||||||||  | |||    
T  24923243 aaaaggatgtttaaaaatgtaaaaagtttttgaatcggaggagtttaaaactccggcgcggtggcaccaccaccggccactgcgccggaaaactatttct 24923342  T
Q  295 cgccggagaagatga 309  Q
    |||||||||||||||    
T  24923343 cgccggagaagatga 24923357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 195 - 306
Target Start/End: Original strand, 17141824 - 17141935
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatct 294  Q
    ||||||||||||||||    || || |||||||||||||| |  || ||||||||||||||||| |||||||||||| |||||||||||||||  |  ||    
T  17141824 aaaaggatgtttaaaaacgtaaaaagtttttgaatcggaggattttaaaactccggcgcggtggcgccaccaccggctaccgcgccggaaaaccgttgct 17141923  T
Q  295 cgccggagaaga 306  Q
    ||||||||||||    
T  17141924 cgccggagaaga 17141935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 4749088 - 4749044
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4749088 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 4749044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 32215929 - 32215992
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaaga 306  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||  |||||  |||||||||    
T  32215929 aactccggcgcggtggtgccaccaccggccaccgcgctggaaaacatgatctcatcggagaaga 32215992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 306
Target Start/End: Original strand, 52296716 - 52296800
Alignment:
Q  221 tttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaaga 306  Q
    |||||||||||| | |  ||| ||||||||||| |||||||||||||||||||||||| |||||||   |||||||||||||||||    
T  52296716 tttttgaatcggcggagttttgaactccggcgcagtggtgccaccaccggccaccgcgtcggaaaa-tttatctcgccggagaaga 52296800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 244 - 286
Target Start/End: Original strand, 772287 - 772329
Alignment:
Q  244 actccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  772287 actccggcgcggaggtgccaccaccggccaccgcgccggaaaa 772329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 244 - 286
Target Start/End: Complemental strand, 20866883 - 20866841
Alignment:
Q  244 actccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  20866883 actctggcgcggtggtgccaccaccggccaccgcgccggaaaa 20866841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 5405338 - 5405293
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    |||||||||||||| || ||||||||||||||||||||||||||||    
T  5405338 aaactccggcgcggcggcgccaccaccggccaccgcgccggaaaac 5405293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 276
Target Start/End: Complemental strand, 638109 - 638076
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccg 276  Q
    ||||||||||||||||||||||||||||||||||    
T  638109 aactccggcgcggtggtgccaccaccggccaccg 638076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 17008297 - 17008342
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    |||||||||||||| |  ||||||||||||||||||||||||||||    
T  17008297 aaactccggcgcggcgacgccaccaccggccaccgcgccggaaaac 17008342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 17022261 - 17022306
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    |||||||||||||| |  ||||||||||||||||||||||||||||    
T  17022261 aaactccggcgcggcgacgccaccaccggccaccgcgccggaaaac 17022306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 21531399 - 21531355
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||    
T  21531399 aaactccggcacggtggtgc-accaccggccaccgcgccggaaaac 21531355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 48077653 - 48077705
Alignment:
Q  254 ggtggtgccaccaccggccaccgcgccggaaaa-cactatctcgccggagaaga 306  Q
    ||||||||||||||||||||||||||||||||| || | |||||||||||||||    
T  48077653 ggtggtgccaccaccggccaccgcgccggaaaagcaat-tctcgccggagaaga 48077705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 26447220 - 26447261
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccgcgccggaa 284  Q
    ||||||||| |||||||||||||| |||||||||||| ||||    
T  26447220 aactccggcacggtggtgccaccatcggccaccgcgctggaa 26447261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 1e-61; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 175 - 325
Target Start/End: Original strand, 20622390 - 20622537
Alignment:
Q  175 aagaattgaaaccagcatgcaaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccac 274  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20622390 aagaattgaaaccagcatgcataaggatgtttagaactacaagaaatttttgaatcggagtaagtttgaactccggcgcggtggtgccaccaccggccac 20622489  T
Q  275 cgcgccggaaaacactatctcgccggagaagatgatgatataagggggcgg 325  Q
    ||||| ||||||||||||||||||||||||   ||||||||||||||||||    
T  20622490 cgcgctggaaaacactatctcgccggagaa---gatgatataagggggcgg 20622537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 20622234 - 20622327
Alignment:
Q  18 aatacataccgagccaaaccgaatctgaaccgtacaggaagaggtaagccaaaccggtacgagaagtaacaaagggtaagagttttgttcatcc 111  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  20622234 aatacataccgagccaaaccggatctgaaccgtagaggaagaggtaagccgaaccggtacgaaaagtaacaaagggtaagagttttgttcatcc 20622327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 17686422 - 17686342
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaagatgatgatataagggggcgg 325  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||   ||||||||||||||||    
T  17686422 aaactccggcgcggtggtgccaccaccggccatcgcgccggaaaacactgtctcgccggagaaga---tgatataagggggcgg 17686342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 21851582 - 21851519
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaaga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||    
T  21851582 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac-gtttctcgccggagaaga 21851519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 21860017 - 21859954
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaaga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||    
T  21860017 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac-gtttctcgccggagaaga 21859954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 33308229 - 33308165
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaaga 306  Q
    |||||||||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||    
T  33308229 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaagcttcatctcgccggagaaga 33308165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 44373740 - 44373806
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaagatga 309  Q
    |||||||||| ||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  44373740 aaactccggcacggtggtgc-accaccggccaccgcgccggaaagcactgtctcgccggagaagatga 44373806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 44389651 - 44389717
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaagatga 309  Q
    |||||||||| ||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  44389651 aaactccggcacggtggtgc-accaccggccaccgcgccggaaagcactgtctcgccggagaagatga 44389717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 309
Target Start/End: Original strand, 28479888 - 28480002
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatct 294  Q
    |||||||||||||||| |  || || ||||||||| |||  |  || ||||||||||||||||| ||||||||||||||| ||||||||||||  |  ||    
T  28479888 aaaaggatgtttaaaaatgtaaaaagtttttgaattggacgagtttaaaactccggcgcggtggcgccaccaccggccactgcgccggaaaactattgct 28479987  T
Q  295 cgccggagaagatga 309  Q
    |||||||||||||||    
T  28479988 cgccggagaagatga 28480002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 287
Target Start/End: Complemental strand, 34543113 - 34543045
Alignment:
Q  219 aatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    |||||||||||||| | |  || | ||||||||||||||||||||||||||||||||||||||||||||    
T  34543113 aatttttgaatcggcggagtttcacactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 34543045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 22186090 - 22186152
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaaga 306  Q
    |||||||||||||||||||||||||||||||||||||| |||||   |||||||||||||||||    
T  22186090 aactccggcgcggtggtgccaccaccggccaccgcgccagaaaa-tttatctcgccggagaaga 22186152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 242 - 285
Target Start/End: Original strand, 25262592 - 25262635
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25262592 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 25262635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 195 - 287
Target Start/End: Original strand, 21149978 - 21150070
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    |||||||||||||||| |  || ||  ||||||||||||| |  || ||||||||||||||||| ||||||||| || |||||||||||||||    
T  21149978 aaaaggatgtttaaaaatgtaaaaagcttttgaatcggaggagtttaaaactccggcgcggtggcgccaccaccagctaccgcgccggaaaac 21150070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 284
Target Start/End: Complemental strand, 21322044 - 21322005
Alignment:
Q  245 ctccggcgcggtggtgccaccaccggccaccgcgccggaa 284  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21322044 ctccggcgcggtggtgccaccaccggccaccgcgccggaa 21322005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 39756276 - 39756339
Alignment:
Q  221 tttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaa 284  Q
    |||||||||||||| |  ||  ||||||||||||||||||||||| ||||||||||||||||||    
T  39756276 tttttgaatcggaggagtttcgaactccggcgcggtggtgccaccgccggccaccgcgccggaa 39756339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 243 - 285
Target Start/End: Complemental strand, 27425331 - 27425289
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccgcgccggaaa 285  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  27425331 aactccggcgcggtggtgccaccgccggccaccgcgccggaaa 27425289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 243 - 285
Target Start/End: Complemental strand, 27440377 - 27440335
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccgcgccggaaa 285  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  27440377 aactccggcgcggtggtgccaccgccggccaccgcgccggaaa 27440335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 249 - 287
Target Start/End: Complemental strand, 34529109 - 34529071
Alignment:
Q  249 ggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34529109 ggcgcggtggtgccaccaccggccaccgcgccggaaaac 34529071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 26718699 - 26718655
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||    
T  26718699 aaactccggcacggtggtgc-accaccggccaccgcgccggaaaac 26718655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 26732887 - 26732843
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||    
T  26732887 aaactccggcacggtggtgc-accaccggccaccgcgccggaaaac 26732843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 25193149 - 25193113
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccgcgc 279  Q
    |||||||||||||||||||||||||||||||| ||||    
T  25193149 aactccggcgcggtggtgccaccaccggccactgcgc 25193113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 286
Target Start/End: Original strand, 4281573 - 4281608
Alignment:
Q  251 cgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    |||||| |||||||||||||||||||||||||||||    
T  4281573 cgcggtagtgccaccaccggccaccgcgccggaaaa 4281608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 280
Target Start/End: Complemental strand, 25995565 - 25995531
Alignment:
Q  246 tccggcgcggtggtgccaccaccggccaccgcgcc 280  Q
    |||| ||||||||||||||||||||||||||||||    
T  25995565 tccgacgcggtggtgccaccaccggccaccgcgcc 25995531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 35038869 - 35038910
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaa 284  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  35038869 aaactccggcacggtggtgc-accaccggccaccgcgccggaa 35038910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 27605582 - 27605541
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccgga 283  Q
    |||||||| ||||||||||||||| |||||||||| ||||||    
T  27605582 aaactccgacgcggtggtgccacctccggccaccgtgccgga 27605541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 6e-57; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 175 - 325
Target Start/End: Original strand, 31422654 - 31422801
Alignment:
Q  175 aagaattgaaaccagcatgcaaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccac 274  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  31422654 aagaattgaaaccagcatgcataaggatgtttagaactataagaaatttttaaatcggagtaagtttgaactccggcgcagtggtgccaccaccggccac 31422753  T
Q  275 cgcgccggaaaacactatctcgccggagaagatgatgatataagggggcgg 325  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  31422754 cgcgccggaaaacactatctcgccggagaa---gatgatataagggggcgg 31422801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 233 - 355
Target Start/End: Original strand, 31411804 - 31411923
Alignment:
Q  233 agtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaagatgatgatataagggggcggctgtttg 332  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  31411804 agtaagtttgaactccggtgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaa---gatgatataagggggcggctgtttg 31411900  T
Q  333 ttttgttaagagagaagtgagaa 355  Q
    ||||||| |||||||||||||||    
T  31411901 ttttgttgagagagaagtgagaa 31411923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 31411623 - 31411716
Alignment:
Q  18 aatacataccgagccaaaccgaatctgaaccgtacaggaagaggtaagccaaaccggtacgagaagtaacaaagggtaagagttttgttcatcc 111  Q
    ||||||||||||||||||||| ||||||||| || | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31411623 aatacataccgagccaaaccggatctgaaccatagaagaagaggtaagccgaaccggtacgagaagtaacaaagggtaagagttttgttcatcc 31411716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 31422501 - 31422591
Alignment:
Q  18 aatacataccgagccaaaccgaatctgaaccgtacaggaagaggtaagccaaaccggtacgagaagtaacaaagggtaagagttttgttcatcc 111  Q
    ||||||||||||||||||||| ||||||||||||   ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  31422501 aatacataccgagccaaaccggatctgaaccgta---gaagaggtaagccgaaccggtacgaaaagtaacaaagggtaagagttttgttcatcc 31422591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 31549577 - 31549514
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaaga 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  31549577 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa-tttatctcgccggagaaga 31549514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 29185310 - 29185243
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaagatga 309  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||| ||| || ||||||||||||    
T  29185310 aaactccggcacggtggtgccaccaccggccaccgcgccggaagacacaatcccgtcggagaagatga 29185243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 195 - 283
Target Start/End: Original strand, 29189206 - 29189294
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccgga 283  Q
    |||||||||||||||| |  || || ||| |||||||||||   ||| ||||| |||||||||||||||||||||||||||||||||||    
T  29189206 aaaaggatgtttaaaaatgtaaaaagtttgtgaatcggagtggttttgaactcaggcgcggtggtgccaccaccggccaccgcgccgga 29189294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 23568473 - 23568535
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaaga 306  Q
    ||||||||||||||| |||||||||||||||||||||||||||||  | |||||||||||||||    
T  23568473 aactccggcgcggtgatgccaccaccggccaccgcgccggaaaac-ttttctcgccggagaaga 23568535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 195 - 285
Target Start/End: Complemental strand, 24694009 - 24693919
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 285  Q
    |||||||||||||||| | ||| ||| ||||||||||||| |  ||| | |||||||||||||| |||||| ||| || ||||||||||||    
T  24694009 aaaaggatgtttaaaagtgcaaaaaaattttgaatcggagaagttttgagctccggcgcggtggcgccaccgccgtccgccgcgccggaaa 24693919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 285
Target Start/End: Original strand, 24611487 - 24611577
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 285  Q
    |||||||||||||||| | ||| |||  |||||||||||| |  ||| | |||||||||||||| |||||| ||| || ||||||||||||    
T  24611487 aaaaggatgtttaaaagtgcaaaaaaaatttgaatcggagaagttttgagctccggcgcggtggcgccaccgccgtccgccgcgccggaaa 24611577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 2826874 - 2826915
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccgcgccggaa 284  Q
    |||||||||||||||||||||||||||||||| ||| |||||    
T  2826874 aactccggcgcggtggtgccaccaccggccactgcgtcggaa 2826915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 8949174 - 8949114
Alignment:
Q  246 tccggcgcggtggtgccaccaccggccaccgcgccggaaaa-cactatctcgccggagaaga 306  Q
    |||| |||||||||||||||||||||||||||| ||||||| || | |||||||||||||||    
T  8949174 tccgacgcggtggtgccaccaccggccaccgcgtcggaaaagcaat-tctcgccggagaaga 8949114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 20371949 - 20371908
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaa 284  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  20371949 aaactccggcacggtggtgc-accaccggccaccgcgccggaa 20371908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 20397673 - 20397632
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaa 284  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  20397673 aaactccggcacggtggtgc-accaccggccaccgcgccggaa 20397632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 41669276 - 41669341
Alignment:
Q  221 tttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    |||||||||||||| |  ||| ||||||||||||| || |||||| ||| || |||||||||||||    
T  41669276 tttttgaatcggagaagttttgaactccggcgcggaggcgccaccgccgtccgccgcgccggaaaa 41669341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 41684083 - 41684148
Alignment:
Q  221 tttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    |||||||||||||| |  ||| ||||||||||||| || |||||| ||| || |||||||||||||    
T  41684083 tttttgaatcggagaagttttgaactccggcgcggaggcgccaccgccgtccgccgcgccggaaaa 41684148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1487 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: scaffold1487
Description:

Target: scaffold1487; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 136 - 43
Alignment:
Q  18 aatacataccgagccaaaccgaatctgaaccgtacaggaagaggtaagccaaaccggtacgagaagtaacaaagggtaagagttttgttcatcc 111  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  136 aatacataccgagccaaaccggatctgaaccgtagaggaagaggtaagctgaaccggtacgagaagtaacaaagggtaagagttttgttcatcc 43  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 227 - 306
Target Start/End: Original strand, 5995676 - 5995755
Alignment:
Q  227 aatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaaga 306  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5995676 aatcggagtaaggttgaactccggcgcggtggtgccaccaccggccaccgtgccggaaaacactatctcgccggagaaga 5995755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 195 - 287
Target Start/End: Original strand, 3042353 - 3042445
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    ||||||||||||||||    || || |||||||||||||| |  || ||||||||||||||||| ||||||||||||||||||||||||||||    
T  3042353 aaaaggatgtttaaaaacgtaaaaagtttttgaatcggaggagtttaaaactccggcgcggtggcgccaccaccggccaccgcgccggaaaac 3042445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 195 - 286
Target Start/End: Original strand, 20215977 - 20216068
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    |||||||||||||||| |  || || |||||||||||||| |  ||| | ||||||||||||||||||||| ||||||||||||||||||||    
T  20215977 aaaaggatgtttaaaaatgtaaaaagtttttgaatcggagaagttttgagctccggcgcggtggtgccaccgccggccaccgcgccggaaaa 20216068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 195 - 286
Target Start/End: Original strand, 22109998 - 22110089
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    |||||||||||||||| |  || || |||||||||||||| |  ||| | ||||||||||||||||||||| ||||||||||||||||||||    
T  22109998 aaaaggatgtttaaaaatgtaaaaagtttttgaatcggagaagttttgagctccggcgcggtggtgccaccgccggccaccgcgccggaaaa 22110089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 30996993 - 30996948
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30996993 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 30996948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 27048719 - 27048675
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  27048719 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 27048675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 27058963 - 27058919
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  27058963 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 27058919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 195 - 286
Target Start/End: Original strand, 16587761 - 16587852
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    |||||||||||||||| |  || || |||||||||||||  |  || ||||||||||||||||| |||||||||||| ||||||||||||||    
T  16587761 aaaaggatgtttaaaaatgtaaaaagtttttgaatcggaagagtttgaaactccggcgcggtggcgccaccaccggcaaccgcgccggaaaa 16587852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 195 - 286
Target Start/End: Complemental strand, 16607619 - 16607528
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    |||||||||||||||| |  || || |||||||||||||  |  || ||||||||||||||||| |||||||||||| ||||||||||||||    
T  16607619 aaaaggatgtttaaaaatgtaaaaagtttttgaatcggaagagtttgaaactccggcgcggtggcgccaccaccggcaaccgcgccggaaaa 16607528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 195 - 286
Target Start/End: Original strand, 24919129 - 24919220
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    |||||||||||||||| |  || || |||||||||||||| |  ||  ||||||||||||||||||||||  ||||||||||||||||||||    
T  24919129 aaaaggatgtttaaaaatgtaaaaagtttttgaatcggaggagtttcgaactccggcgcggtggtgccactgccggccaccgcgccggaaaa 24919220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 286
Target Start/End: Complemental strand, 17092559 - 17092468
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    ||||||||||| |||| |  || ||||||||||||||||| |  ||| |||||||||| ||||| |||||| ||||||| ||||||||||||    
T  17092559 aaaaggatgttcaaaaatgtaaaaaatttttgaatcggaggagttttgaactccggcgtggtggcgccaccgccggccatcgcgccggaaaa 17092468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 244 - 286
Target Start/End: Complemental strand, 5488208 - 5488166
Alignment:
Q  244 actccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  5488208 actccggcgcggtggtgccaccaccggccaccgtgccggaaaa 5488166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 24296491 - 24296429
Alignment:
Q  224 ttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    ||||||||||| |  ||| |||||||||| |||||||||||| ||||||||||||||||||||    
T  24296491 ttgaatcggaggagttttgaactccggcgtggtggtgccaccgccggccaccgcgccggaaaa 24296429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 24310522 - 24310460
Alignment:
Q  224 ttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    ||||||||||| |  ||| |||||||||| |||||||||||| ||||||||||||||||||||    
T  24310522 ttgaatcggaggagttttgaactccggcgtggtggtgccaccgccggccaccgcgccggaaaa 24310460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 15390725 - 15390685
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccgg 282  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  15390725 aaactccggcgcggtggtgccaacaccggccaccgcgccgg 15390685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 284
Target Start/End: Original strand, 1141767 - 1141806
Alignment:
Q  245 ctccggcgcggtggtgccaccaccggccaccgcgccggaa 284  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  1141767 ctccggcgcggcggtgccaccaccggccaccgcgccggaa 1141806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 285
Target Start/End: Complemental strand, 13289874 - 13289784
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 285  Q
    |||||||||||||||| | | | |||  |||||||||||| |  ||| | |||||||||||||| |||||||||| || ||||||||||||    
T  13289874 aaaaggatgtttaaaagtgcgaaaaaaatttgaatcggagaagttttgagctccggcgcggtggcgccaccaccgtccgccgcgccggaaa 13289784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 285
Target Start/End: Complemental strand, 13304841 - 13304751
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 285  Q
    |||||||||||||||| | | | |||  |||||||||||| |  ||| | |||||||||||||| |||||||||| || ||||||||||||    
T  13304841 aaaaggatgtttaaaagtgcgaaaaaaatttgaatcggagaagttttgagctccggcgcggtggcgccaccaccgtccgccgcgccggaaa 13304751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 19827626 - 19827582
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||    
T  19827626 aaactccggcacggtggtgc-accaccggccaccgcgccggaaaac 19827582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 877460 - 877419
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccgcgccggaa 284  Q
    ||||||| |||||||||||||||| |||||||| ||||||||    
T  877460 aactccgacgcggtggtgccaccatcggccaccacgccggaa 877419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 18611465 - 18611414
Alignment:
Q  255 gtggtgccaccaccggccaccgcgccggaaaa-cactatctcgccggagaaga 306  Q
    |||||||||||||||||||||||| ||||||| || | |||||||||||||||    
T  18611465 gtggtgccaccaccggccaccgcgtcggaaaagcaat-tctcgccggagaaga 18611414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 180 - 325
Target Start/End: Complemental strand, 64777 - 64635
Alignment:
Q  180 ttgaaaccagcatgcaaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgc 279  Q
    ||||||| || ||| ||||||||||||||||    ||  ||||||||| |  ||| | ||| ||||||||||||||||||||||||| || |||||||||    
T  64777 ttgaaacaagaatgaaaaaggatgtttaaaaacgtaaacaatttttgatttagaggaggttgaaactccggcgcggtggtgccaccaacgaccaccgcgc 64678  T
Q  280 cggaaaacactatctcgccggagaagatgatgatataagggggcgg 325  Q
    ||||||||||| |||||||||||||||   ||||||||||||||||    
T  64677 cggaaaacactgtctcgccggagaaga---tgatataagggggcgg 64635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 195 - 309
Target Start/End: Original strand, 16289505 - 16289619
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatct 294  Q
    |||||||||||||||| |  || || |||||||||||||| |  || ||||||||||||||||| ||||||||||||||||||||||||||||  |  ||    
T  16289505 aaaaggatgtttaaaaatgtaaaaagtttttgaatcggaggactttaaaactccggcgcggtggcgccaccaccggccaccgcgccggaaaactattgct 16289604  T
Q  295 cgccggagaagatga 309  Q
    |||||||||||||||    
T  16289605 cgccggagaagatga 16289619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 195 - 285
Target Start/End: Complemental strand, 2216652 - 2216562
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 285  Q
    |||||||||||||||| || || || |||||||||||||| |  || ||||||||||||||||| |||||||||||||||||| |||||||    
T  2216652 aaaaggatgtttaaaaatataaaaagtttttgaatcggaggagtttgaaactccggcgcggtggcgccaccaccggccaccgcaccggaaa 2216562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 195 - 286
Target Start/End: Original strand, 4444307 - 4444398
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    |||||||||||||||| |  ||||||  |||||||||||| |  ||| |||||||||| |||||||||||| ||||||||||||||||||||    
T  4444307 aaaaggatgtttaaaaatgtaagaaaaatttgaatcggaggagttttgaactccggcgtggtggtgccaccgccggccaccgcgccggaaaa 4444398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 1005791 - 1005747
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  1005791 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 1005747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 287
Target Start/End: Complemental strand, 11262379 - 11262286
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactcc-ggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    ||||||||||||||||    || || |||||||||||||| |  || ||||||| |||||||||| ||||||||||||||||||||||||||||    
T  11262379 aaaaggatgtttaaaaacgtaaaaagtttttgaatcggaggagtttaaaactcccggcgcggtggcgccaccaccggccaccgcgccggaaaac 11262286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 4504970 - 4504911
Alignment:
Q  246 tccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaaga 306  Q
    ||||||| ||||||||||||||||||||||||||||||||||  | |||||||||||||||    
T  4504970 tccggcgtggtggtgccaccaccggccaccgcgccggaaaac-ttttctcgccggagaaga 4504911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 1775839 - 1775884
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    |||||||||||||| || ||||||||||||||||||||||||||||    
T  1775839 aaactccggcgcggcggcgccaccaccggccaccgcgccggaaaac 1775884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 4887692 - 4887737
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    |||||||||||||| || ||||||||||||||||||||||||||||    
T  4887692 aaactccggcgcggcggcgccaccaccggccaccgcgccggaaaac 4887737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 5517811 - 5517766
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    |||||||||||||| || ||||||||||||||||||||||||||||    
T  5517811 aaactccggcgcggcggcgccaccaccggccaccgcgccggaaaac 5517766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 52987458 - 52987499
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccgcgccggaa 284  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  52987458 aactccggcgcggtggtgccaccaccgaccaccgcgccggaa 52987499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 281
Target Start/End: Complemental strand, 13603426 - 13603387
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccg 281  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  13603426 aaactccggcgcggtggtgccaccatcggccaccgcgccg 13603387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 18954665 - 18954624
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaa 284  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  18954665 aaactccggcgcggtggtgc-accaccggccaccgcgccggaa 18954624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 287
Target Start/End: Original strand, 20053181 - 20053223
Alignment:
Q  245 ctccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  20053181 ctccggcgcggcggcgccaccaccggccaccgcgccggaaaac 20053223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 287
Target Start/End: Original strand, 20075841 - 20075883
Alignment:
Q  245 ctccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  20075841 ctccggcgcggcggcgccaccaccggccaccgcgccggaaaac 20075883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 27551931 - 27551887
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||    
T  27551931 aaactccggcacggtggtgc-accaccggccaccgcgccggaaaac 27551887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 28469304 - 28469260
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||    
T  28469304 aaactccggcacggtggtgc-accaccggccaccgcgccggaaaac 28469260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 286
Target Start/End: Complemental strand, 22876800 - 22876709
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagttta-aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    ||||||||||||||||    || ||||||||||||||||| ||||||  ||||||||||||| || |||||| ||| || |||||||||||||    
T  22876800 aaaaggatgtttaaaaacgtaaaaaatttttgaatcggag-aagtttcgaactccggcgcggaggcgccaccgccgtccgccgcgccggaaaa 22876709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 286
Target Start/End: Complemental strand, 22891860 - 22891769
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagttta-aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    ||||||||||||||||    || ||||||||||||||||| ||||||  ||||||||||||| || |||||| ||| || |||||||||||||    
T  22891860 aaaaggatgtttaaaaacgtaaaaaatttttgaatcggag-aagtttcgaactccggcgcggaggcgccaccgccgtccgccgcgccggaaaa 22891769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 23755578 - 23755524
Alignment:
Q  252 gcggtggtgccaccaccggccaccgcgccggaaaa-cactatctcgccggagaaga 306  Q
    |||||||| |||||||||||||||||||||||||| || | |||||||||||||||    
T  23755578 gcggtggtaccaccaccggccaccgcgccggaaaagcaat-tctcgccggagaaga 23755524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 373
Target Start/End: Complemental strand, 9184861 - 9184831
Alignment:
Q  343 agagaagtgagaacaattgtttagagagaga 373  Q
    |||||||||||||||||||||||||||||||    
T  9184861 agagaagtgagaacaattgtttagagagaga 9184831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 9184940 - 9184899
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaa 284  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  9184940 aaactccggcacggtggtgc-accaccggccaccgcgccggaa 9184899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 31852363 - 31852325
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccgcgccg 281  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  31852363 aactccagcgcagtggtgccaccaccggccaccgcgccg 31852325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 50754261 - 50754220
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccgcgccggaa 284  Q
    |||||||| ||||||||| ||||||||||||| |||||||||    
T  50754261 aactccggtgcggtggtgtcaccaccggccactgcgccggaa 50754220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 286
Target Start/End: Complemental strand, 22861641 - 22861550
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagttta-aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    ||||||||||||||||    || ||| ||||||||||||| ||||||  ||||||||||||| || |||||| ||| || |||||||||||||    
T  22861641 aaaaggatgtttaaaaacgtaaaaaaattttgaatcggag-aagtttcgaactccggcgcggaggcgccaccgccgtccgccgcgccggaaaa 22861550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1120 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold1120
Description:

Target: scaffold1120; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 395 - 462
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaagatga 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  | |||| ||||||||||||    
T  395 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacatgaactcgtcggagaagatga 462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 195 - 306
Target Start/End: Complemental strand, 2594 - 2483
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatct 294  Q
    |||||||||||||||| |  || || |||||||||||||| |  || ||||||||||||||||| |||||||||||| |||||||||||||||  |  ||    
T  2594 aaaaggatgtttaaaaatgtaaaaagtttttgaatcggaggagtttaaaactccggcgcggtggcgccaccaccggctaccgcgccggaaaactattgct 2495  T
Q  295 cgccggagaaga 306  Q
    ||||||||||||    
T  2494 cgccggagaaga 2483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 195 - 309
Target Start/End: Original strand, 19468 - 19582
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagttta-aactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatc 293  Q
    |||||||||||||||| |  || || |||||||||||||| | ||||| ||||||||||||||||||||||| |||||||||||||||||||    ||||    
T  19468 aaaaggatgtttaaaaatgtaaaaagtttttgaatcggagga-gtttagaactccggcgcggtggtgccaccgccggccaccgcgccggaaagttgtatc 19566  T
Q  294 tcgccggagaagatga 309  Q
     |||||||||||||||    
T  19567 acgccggagaagatga 19582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 17515834 - 17515789
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  17515834 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 17515789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 17537380 - 17537425
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  17537380 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 17537425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 559927 - 559863
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaaga 306  Q
    |||||||||||||||||||||||||||||||||||||| |||||||  |  ||||||||||||||    
T  559927 aaactccggcgcggtggtgccaccaccggccaccgcgctggaaaaccttgcctcgccggagaaga 559863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 569836 - 569772
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaaga 306  Q
    |||||||||||||||||||||||||||||||||||||| |||||||  |  ||||||||||||||    
T  569836 aaactccggcgcggtggtgccaccaccggccaccgcgctggaaaaccttgcctcgccggagaaga 569772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 27967430 - 27967386
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  27967430 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 27967386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 27976883 - 27976839
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  27976883 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 27976839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 38411785 - 38411829
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  38411785 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 38411829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 242 - 285
Target Start/End: Complemental strand, 5200643 - 5200600
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5200643 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 5200600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 242 - 285
Target Start/End: Complemental strand, 5209772 - 5209729
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5209772 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 5209729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 15974744 - 15974785
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccgcgccggaa 284  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  15974744 aactccggcgcggtggtgccaccaccggccaccgcgccggaa 15974785  T

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Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 221 - 285
Target Start/End: Original strand, 4185162 - 4185226
Alignment:
Q  221 tttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 285  Q
    |||||||||||||| |  ||  ||||||||||||||||||||||| |||||||||||||||||||    
T  4185162 tttttgaatcggaggagtttcgaactccggcgcggtggtgccaccgccggccaccgcgccggaaa 4185226  T

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Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 195 - 285
Target Start/End: Complemental strand, 13737387 - 13737297
Alignment:
Q  195 aaaaggatgtttaaaactacaagaaatttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 285  Q
    |||||||||||||||| | ||| ||| ||||||||||||| |  ||| | |||||||||||||| |||||| ||| || ||||||||||||    
T  13737387 aaaaggatgtttaaaagtgcaaaaaaattttgaatcggagaagttttgagctccggcgcggtggcgccaccgccgtccgccgcgccggaaa 13737297  T

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Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 16911225 - 16911174
Alignment:
Q  254 ggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaaga 306  Q
    ||||||||||||||||||||||||||||||||||  | |||||||||||||||    
T  16911225 ggtggtgccaccaccggccaccgcgccggaaaac-ttttctcgccggagaaga 16911174  T

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Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 16544220 - 16544283
Alignment:
Q  246 tccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaagatga 309  Q
    ||||| |||||||||||||||||||||||||||| |||| | || ||| || ||||||||||||    
T  16544220 tccggtgcggtggtgccaccaccggccaccgcgctggaagatacaatcccgtcggagaagatga 16544283  T

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Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 16621442 - 16621379
Alignment:
Q  246 tccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaagatga 309  Q
    ||||| |||||||||||||||||||||||||||| |||| | || ||| || ||||||||||||    
T  16621442 tccggtgcggtggtgccaccaccggccaccgcgctggaagatacaatcccgtcggagaagatga 16621379  T

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Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 1887982 - 1887938
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||    
T  1887982 aaactccggcacggtggtgc-accaccggccaccgcgccggaaaac 1887938  T

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Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 1902083 - 1902039
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||    
T  1902083 aaactccggcacggtggtgc-accaccggccaccgcgccggaaaac 1902039  T

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Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 16474461 - 16474424
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgc 279  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  16474461 aaactccggcgcggtggtgccaccatcggccaccgcgc 16474424  T

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Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 24187181 - 24187137
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||    
T  24187181 aaactccggcacggtggtgc-accaccggccaccgcgccggaaaac 24187137  T

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Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 18750205 - 18750250
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  18750205 aaactccggcgcggtggtgccaccaccggccaccgcgccggaaaac 18750250  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 13463836 - 13463879
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  13463836 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 13463879  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 221 - 285
Target Start/End: Original strand, 18597075 - 18597139
Alignment:
Q  221 tttttgaatcggagtaagtttaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 285  Q
    |||||||||||||| |  ||  ||||||||||||||||||||||| |||||||||||||||||||    
T  18597075 tttttgaatcggaggagtttcgaactccggcgcggtggtgccaccgccggccaccgcgccggaaa 18597139  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 284
Target Start/End: Original strand, 3650803 - 3650842
Alignment:
Q  245 ctccggcgcggtggtgccaccaccggccaccgcgccggaa 284  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  3650803 ctccggcgcggcggtgccaccaccggccaccgcgccggaa 3650842  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 179865 - 179827
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccgcgccg 281  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  179865 aactccggcgcggtggtgccaccaccggccatcgcgccg 179827  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 8402117 - 8402158
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccgcgccggaa 284  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  8402117 aactccggtgtggtggtgccaccaccggccaccgcgccggaa 8402158  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 286
Target Start/End: Original strand, 35197953 - 35197987
Alignment:
Q  252 gcggtggtgccaccaccggccaccgcgccggaaaa 286  Q
    |||||||||||||||| ||||||||||||||||||    
T  35197953 gcggtggtgccaccacaggccaccgcgccggaaaa 35197987  T

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Target: scaffold0669 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 6074 - 6011
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaaga 306  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||  |||||  |||||||||    
T  6074 aactccggcacggtggtgccaccaccggccaccgcgccggtaaacatgatctcatcggagaaga 6011  T

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Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 24495 - 24536
Alignment:
Q  242 aaactccggcgcggtggtgccaccaccggccaccgcgccgga 283  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  24495 aaactccggtgcggtggtgccaccaccggccaccgcgccgga 24536  T

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Target: scaffold2141 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold2141
Description:

Target: scaffold2141; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 284
Target Start/End: Original strand, 158 - 197
Alignment:
Q  245 ctccggcgcggtggtgccaccaccggccaccgcgccggaa 284  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  158 ctccggcgcggcggtgccaccaccggccaccgcgccggaa 197  T

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Target: scaffold0497 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 373
Target Start/End: Original strand, 11927 - 11959
Alignment:
Q  341 agagagaagtgagaacaattgtttagagagaga 373  Q
    |||||||||||||||||||||||||||||||||    
T  11927 agagagaagtgagaacaattgtttagagagaga 11959  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 47890 - 47854
Alignment:
Q  317 agggggcggctgtttgttttgttaagagagaagtgag 353  Q
    ||||||||||||||||||||||| |||||||||||||    
T  47890 agggggcggctgtttgttttgttgagagagaagtgag 47854  T

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Target: scaffold0853 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 4271 - 4334
Alignment:
Q  243 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaacactatctcgccggagaaga 306  Q
    |||||||||||||||||||| || |||| |||||||| ||||||  | |||||| |||||||||    
T  4271 aactccggcgcggtggtgccgccgccggtcaccgcgctggaaaattcaatctcgtcggagaaga 4334  T

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Target: scaffold0703 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 351
Target Start/End: Complemental strand, 6774 - 6739
Alignment:
Q  316 aagggggcggctgtttgttttgttaagagagaagtg 351  Q
    |||||||||||||||||||||||| |||||||||||    
T  6774 aagggggcggctgtttgttttgttgagagagaagtg 6739  T

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