View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14618_low_10 (Length: 323)

Name: NF14618_low_10
Description: NF14618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14618_low_10
NF14618_low_10
[»] chr1 (1 HSPs)
chr1 (11-308)||(23535017-23535311)


Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 308
Target Start/End: Original strand, 23535017 - 23535311
Alignment:
Q  11 aaaatgtacatgatataggaccacaggtgcaggaggtcaatgacannnnnnnnttcagttgatctttcacatagatgagtaggcacacccacacacaacg 110  Q
    |||||||||||||||  ||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||    
T  23535017 aaaatgtacatgata--ggaccacaggtgcaggaggtcaatgacaggggggg-ttcagttgatctttcacatagatgagtaggcacacccacacacaacg 23535113  T
Q  111 ctatcaaatataattggtctattgaaccagaactacatgtgatacccacctaaagaaatcaattctatgttcaacactcttctgtacacttgtcataggg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23535114 ctatcaaatataattggtctattgaaccagaactacatgtgatacccacctaaagaaatcaattctatgttcaacactcttctgtacacttgtcataggg 23535213  T
Q  211 tagtttaagctagccaacaatgcaagttgaaattaaagggattcatgtacaaccttccaccatcaagtgggaagagtcctcttctcattatggcaact 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23535214 tagtttaagctagccaacaatgcaagttgaaattaaagggattcatgtacaaccttccaccatcaagtgggaagagtcctcttctcattatggcaact 23535311  T

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