View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14618_low_11 (Length: 266)
Name: NF14618_low_11
Description: NF14618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14618_low_11 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 266
Target Start/End: Original strand, 223064 - 223324
Alignment:
| Q |
7 |
gggggatggatagctcaactgggttgagctaagagttaagtagtcggaagtctaggattcaagtcctcacaaggaaataaaaaac---acacaacaatta |
103 |
Q |
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| T |
223064 |
gggggttggatagctcaactggtttgagctaagagttaagtagtcggaagcctaggattcaagtcctcacaaggaaataaaaaaactaacacaacaatta |
223163 |
T |
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| Q |
104 |
acatactaacatttatcattnnnnnnntgtcaaaatcaatttcacatctctcttgaataaattttgccacatccaaaactgaaccaaacataaactaaac |
203 |
Q |
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| T |
223164 |
acatactaacatttatcattaaaaaaatgtcaaaatcaatttcacatctcta--gaataaattttgccacatccaaaactaaaccaaacataaactaaac |
223261 |
T |
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| Q |
204 |
taaactcacaataaaagtttcaaaatcaatttttacaaccttagtatgaaagaaacacttaac |
266 |
Q |
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| T |
223262 |
taaactcacaataaaagtttcaaaatcaatttttacaaccttagtatgaaagaaacacttaac |
223324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 260
Target Start/End: Original strand, 218020 - 218145
Alignment:
| Q |
131 |
tgtcaaaatcaatttcacatctctcttgaataaattttgccacatccaaaactgaa-ccaaacataaactaaactaaactcacaataaaagtttcaaaat |
229 |
Q |
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||||||||||||||||||||||| ||| ||||||||| |||||||| |||| ||||||||| |||||||||| | || ||||| || ||||| |
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| T |
218020 |
tgtcaaaatcaatttcacatctccaa--aatcaattttgccttatccaaaagtgaaaccaaacatacactaaactaactt---aagaaaagattaaaaat |
218114 |
T |
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| Q |
230 |
caatttttacaaccttagtatgaaagaaaca |
260 |
Q |
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| T |
218115 |
caatttttacaaccttagaatgaaagaaaca |
218145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 29839068 - 29839124
Alignment:
| Q |
206 |
aactcacaataaaagtttcaaaatcaatttttacaaccttagtatgaaagaaacact |
262 |
Q |
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| T |
29839068 |
aactcaaaataaaagattcaaaaacaatttttacaacctttggataaaagaaacact |
29839124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 29728862 - 29728744
Alignment:
| Q |
7 |
gggggatggatagctcaactgggttgagctaagagttaagtagtcggaagtctaggattcaagtcctcacaaggaaataaaaaac--acacaacaattaa |
104 |
Q |
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||||| ||| |||||||||||| |||||||||| |||||| ||| ||| | ||| |||||||||| ||||| | ||||||| ||| ||||||||| |
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| T |
29728862 |
gggggttgggtagctcaactggtttgagctaagggttaaggagttggagattcagggttcaagtcctattaaggagaaaaaaaactaacataacaattaa |
29728763 |
T |
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| Q |
105 |
catactaacatttatcatt |
123 |
Q |
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|||||||||| || ||||| |
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| T |
29728762 |
catactaacacttgtcatt |
29728744 |
T |
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