View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14618_low_12 (Length: 226)
Name: NF14618_low_12
Description: NF14618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14618_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 28688 - 28495
Alignment:
| Q |
18 |
aagcagtaaagtgaagatggggctagcaacagcaagagcaactgtaagcatttgtggtgctgctgctgctgcatcaccatcaagcattgcaaagcctctc |
117 |
Q |
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| T |
28688 |
aagcagtaaagtgaagatggggctagcaacagcaagagcaactgtaagcatttgtggtgctgctgctgctgcatcaccatcaagcattgcaaagcctctc |
28589 |
T |
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| Q |
118 |
catcctcgttctcactgccatttccttccaacctctcttttctcctcctgtatgttctctttctttcttcatatattcactttaccctcctttc |
211 |
Q |
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| T |
28588 |
catcctcgttctcactgccatttccttccaacctctcttttctcctcctgtatgttctctttctttcttcatatattcactttaccctcctttc |
28495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 89 - 197
Target Start/End: Complemental strand, 21354030 - 21353917
Alignment:
| Q |
89 |
catcaccatcaagcattgcaaagcctctccatcctcgttctcactgccatttccttccaacctctcttttctcctcctgtatg-----ttctctttcttt |
183 |
Q |
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||||| |||||||||||| ||||| |||| |||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |||||||||| | |
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| T |
21354030 |
catcagcatcaagcattgaaaagcttctctatcctcgtactcactgctatttccttccaacctctcttttctcttcctgtatgttctgttctctttctgt |
21353931 |
T |
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| Q |
184 |
cttcatatattcac |
197 |
Q |
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| T |
21353930 |
cttcatatattcac |
21353917 |
T |
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