View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14618_low_3 (Length: 467)

Name: NF14618_low_3
Description: NF14618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14618_low_3
NF14618_low_3
[»] chr5 (4 HSPs)
chr5 (73-451)||(32796960-32797338)
chr5 (1-84)||(32796853-32796936)
chr5 (331-375)||(37050423-37050467)
chr5 (215-313)||(31610763-31610862)
[»] scaffold0116 (1 HSPs)
scaffold0116 (206-313)||(10122-10232)
[»] chr8 (3 HSPs)
chr8 (202-312)||(12686988-12687099)
chr8 (333-375)||(13795005-13795047)
chr8 (331-371)||(12686930-12686970)
[»] chr7 (1 HSPs)
chr7 (203-313)||(10484238-10484347)
[»] chr1 (5 HSPs)
chr1 (206-309)||(8374518-8374620)
chr1 (209-313)||(49275404-49275510)
chr1 (220-371)||(26308946-26309098)
chr1 (331-367)||(20997448-20997484)
chr1 (243-313)||(49593184-49593253)
[»] chr3 (2 HSPs)
chr3 (215-313)||(11462523-11462621)
chr3 (329-363)||(11462474-11462508)
[»] chr4 (3 HSPs)
chr4 (329-373)||(8362392-8362436)
chr4 (328-369)||(16648908-16648949)
chr4 (331-375)||(45002076-45002120)
[»] scaffold0034 (1 HSPs)
scaffold0034 (334-375)||(102674-102715)


Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 73 - 451
Target Start/End: Original strand, 32796960 - 32797338
Alignment:
Q  73 tatgatagttttgatggatttggcttcaatcaacatatggcttatatatgcaataattagacataaacgatgcattcttacgtggaga--tcttcatgaa 170  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||    
T  32796960 tatgatagttttgatggatttggcttcaatcaacatatggtttatatatgcaataattagacataagcgatgcattcttacgtggagagatcttcatgaa 32797059  T
Q  171 gatctacaacgaacctttctattggactcactcagggccgaccgaataattttttaaaataagtgaggcctaaagcaagattggatatatggggcc-ttt 269  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  32797060 gatctacaacgaacctttctgttggactcactcagggccgaccgaataatttttaaaaataagtgaggcctaaagcaagattggatatatggggcctttt 32797159  T
Q  270 ttattagaatatgaggccttttttacttgtaaaatctaatgaaannnnnnnnnnnnngttgggggcctaaagcgagggctttggttgccttacccttagg 369  Q
    |||||||||||||||||||||||||||||||||||||||||||              ||||||| |||||||||||| ||||||| ||||||||||||||    
T  32797160 ttattagaatatgaggccttttttacttgtaaaatctaatgaa---tttttttttttgttggggacctaaagcgaggtctttggtggccttacccttagg 32797256  T
Q  370 ccagccatggactcacttcctccattcgtaaccaagtatgcaagctaacaaaattcttatatggactgaagcaagccaaaag 451  Q
    || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32797257 ccggccatggactcacttcctccattcgtaaccaagtacgcaagctaacaaaattcttatatggactgaagcaagccaaaag 32797338  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 32796853 - 32796936
Alignment:
Q  1 gatgcatcagttggtcgttataaagcacgactggttgcaaagggttacaatcagtgagaaggattggattattatgatagtttt 84  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32796853 gatggatcagttggtcgttataaagcacgactggttgcaaagggttacaatcagtgagaaggattggattattatgatactttt 32796936  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 375
Target Start/End: Original strand, 37050423 - 37050467
Alignment:
Q  331 ggggcctaaagcgagggctttggttgccttacccttaggccagcc 375  Q
    |||||||||||||||||||| |||  |||||||||||||||||||    
T  37050423 ggggcctaaagcgagggcttgggtcaccttacccttaggccagcc 37050467  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 313
Target Start/End: Original strand, 31610763 - 31610862
Alignment:
Q  215 aataattttttaaaataagtgaggcctaaagcaagattggatatatggggcc--tttttattagaatatgaggccttttttacttgtaaaatctaatgaa 312  Q
    |||||| ||| ||||||||||| |||||||||||  ||| ||||||||   |  ||||||||||||||||| | ||||||| |||||||  |||||||||    
T  31610763 aataatatttaaaaataagtgaagcctaaagcaaagttgaatatatggaaactttttttattagaatatgatg-cttttttgcttgtaagctctaatgaa 31610861  T

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Target: scaffold0116 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 206 - 313
Target Start/End: Complemental strand, 10232 - 10122
Alignment:
Q  206 ggccgaccgaataattttttaaaataagtgaggcctaaagcaagattggatatatggggcc----tttttattagaatatgaggccttttttacttgtaa 301  Q
    ||||| || ||| ||||||||||||||||| ||||||||||||||||| ||||| | ||||    ||||||||||||||||||| |||||||||||||||    
T  10232 ggccggcctaatcattttttaaaataagtggggcctaaagcaagattgaatatacgaggcctttttttttattagaatatgagg-cttttttacttgtaa 10134  T
Q  302 aatctaatgaaa 313  Q
    ||||||||||||    
T  10133 aatctaatgaaa 10122  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 202 - 312
Target Start/End: Complemental strand, 12687099 - 12686988
Alignment:
Q  202 tcagggccgaccgaataattttttaaaataagtgaggcctaaagcaagattggatatatggggc--ctttttattagaatatgaggccttttttacttgt 299  Q
    ||||||||| || |||||||||  ||||||||| |||||||||||||||||| |||||||||||   ||||||||||||||||||||| ||||| ||| |    
T  12687099 tcagggccggcctaataattttaaaaaataagtaaggcctaaagcaagattgaatatatggggcttttttttattagaatatgaggcc-tttttgcttat 12687001  T
Q  300 aaaatctaatgaa 312  Q
    |||||||||||||    
T  12687000 aaaatctaatgaa 12686988  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 13795047 - 13795005
Alignment:
Q  333 ggcctaaagcgagggctttggttgccttacccttaggccagcc 375  Q
    |||||||||||||||||| ||| ||||||||||||||||||||    
T  13795047 ggcctaaagcgagggcttgggtcgccttacccttaggccagcc 13795005  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 371
Target Start/End: Complemental strand, 12686970 - 12686930
Alignment:
Q  331 ggggcctaaagcgagggctttggttgccttacccttaggcc 371  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  12686970 ggggcctaaagcgagggctttggtggctttacccttaggcc 12686930  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 203 - 313
Target Start/End: Original strand, 10484238 - 10484347
Alignment:
Q  203 cagggccgaccgaataattttttaaaataagtgaggcctaaagcaagattggatatatggggcctttttattagaatatgaggccttttttacttgtaaa 302  Q
    ||||||||||| |||||||||| |||||||||||| ||||||||||  ||  ||||||||||||||||| ||||||||||||| | ||| | ||||||||    
T  10484238 cagggccgacctaataatttttaaaaataagtgagacctaaagcaatgttaaatatatggggccttttttttagaatatgaggtc-tttctgcttgtaaa 10484336  T
Q  303 atctaatgaaa 313  Q
    || ||||||||    
T  10484337 atataatgaaa 10484347  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 8374518 - 8374620
Alignment:
Q  206 ggccgaccgaataattttttaaaataagtgaggcctaaagcaagattggatatatggggcctttttattagaatatgaggccttttttacttgtaaaatc 305  Q
    |||||| | |||| ||||| |||||||||| ||||||||||||| ||| |||||||| |||||||||||||||||||||| | ||||| || ||||||||    
T  8374518 ggccgatctaatactttttaaaaataagtggggcctaaagcaaggttgaatatatggtgcctttttattagaatatgaggtc-tttttcctcgtaaaatc 8374616  T
Q  306 taat 309  Q
    ||||    
T  8374617 taat 8374620  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 313
Target Start/End: Original strand, 49275404 - 49275510
Alignment:
Q  209 cgaccgaataattttttaaaataagtgaggcctaaagcaagattggatatatggggcctttt---tattagaatatgaggccttttttacttgtaaaatc 305  Q
    ||||| |||||||||| ||||||||||  |  ||||||||| ||| ||||||| | ||||||   ||||||||||||||||| ||||| |||||||||||    
T  49275404 cgacctaataatttttaaaaataagtggagtttaaagcaaggttgaatatatgtgaccttttttttattagaatatgaggcc-tttttgcttgtaaaatc 49275502  T
Q  306 taatgaaa 313  Q
    ||||||||    
T  49275503 taatgaaa 49275510  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 371
Target Start/End: Complemental strand, 26309098 - 26308946
Alignment:
Q  220 ttttttaaaataagtgaggcctaaagcaagattggatatatggggccttttt--attagaatatgaggccttttttacttgtaaaatctaatgaaannnn 317  Q
    ||||| |||||||||| | ||||||||| | ||| || ||||||||||||||  ||||||||||||  ||| ||| ||||||||||| ||||||||        
T  26309098 tttttaaaaataagtgggacctaaagcatggttgaatgtatggggcctttttttattagaatatgaaacctcttt-acttgtaaaatttaatgaaaaata 26309000  T
Q  318 nnnnnnnnngttgggggcctaaagcgagggctttggttgccttacccttaggcc 371  Q
              | ||||||||||||||||||||||||| ||||||||||||||||    
T  26308999 attttttttttggggggcctaaagcgagggctttggtggccttacccttaggcc 26308946  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 367
Target Start/End: Original strand, 20997448 - 20997484
Alignment:
Q  331 ggggcctaaagcgagggctttggttgccttaccctta 367  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  20997448 ggggcctaaaacgagggctttggtcgccttaccctta 20997484  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 49593184 - 49593253
Alignment:
Q  243 aagcaagattggatatatggggcctttt-tattagaatatgaggccttttttacttgtaaaatctaatgaaa 313  Q
    ||||||||||| ||| ||||  |||||| ||||||||||||||||  ||||| || ||||||||||||||||    
T  49593184 aagcaagattgaatacatggttccttttttattagaatatgaggc--tttttgctcgtaaaatctaatgaaa 49593253  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 313
Target Start/End: Complemental strand, 11462621 - 11462523
Alignment:
Q  215 aataattttttaaaataagtgaggcctaaagcaagattggatatatggggcct--ttttattagaatatgaggccttttttacttgtaaaatctaatgaa 312  Q
    |||||||||| |||||||| | || |||||| ||| ||| |||||||||||||  ||||||||||||||||||||  |||| ||||||||||||||||||    
T  11462621 aataatttttaaaaataaggggggtctaaagtaaggttgaatatatggggcctttttttattagaatatgaggcc--ttttgcttgtaaaatctaatgaa 11462524  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Complemental strand, 11462508 - 11462474
Alignment:
Q  329 tgggggcctaaagcgagggctttggttgccttacc 363  Q
    |||||||||||||||||||||||||| ||||||||    
T  11462508 tgggggcctaaagcgagggctttggtggccttacc 11462474  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 373
Target Start/End: Original strand, 8362392 - 8362436
Alignment:
Q  329 tgggggcctaaagcgagggctttggttgccttacccttaggccag 373  Q
    |||||||||||||||||||||| |||||||||| |||||||||||    
T  8362392 tgggggcctaaagcgagggcttgggttgccttaaccttaggccag 8362436  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 16648949 - 16648908
Alignment:
Q  328 ttgggggcctaaagcgagggctttggttgccttacccttagg 369  Q
    ||||||||||||||||||||||| ||| ||||||||||||||    
T  16648949 ttgggggcctaaagcgagggcttgggtcgccttacccttagg 16648908  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 375
Target Start/End: Complemental strand, 45002120 - 45002076
Alignment:
Q  331 ggggcctaaagcgagggctttggttgccttacccttaggccagcc 375  Q
    |||||| |||||||| |||| ||| ||||||||||||||||||||    
T  45002120 ggggccgaaagcgagagcttgggtcgccttacccttaggccagcc 45002076  T

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Target: scaffold0034 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 334 - 375
Target Start/End: Complemental strand, 102715 - 102674
Alignment:
Q  334 gcctaaagcgagggctttggttgccttacccttaggccagcc 375  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  102715 gcctaaagcaagggcttgggttgccttacccttaggccagcc 102674  T

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