View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14618_low_4 (Length: 401)

Name: NF14618_low_4
Description: NF14618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14618_low_4
NF14618_low_4
[»] chr5 (13 HSPs)
chr5 (19-386)||(39451565-39451932)
chr5 (19-386)||(39455192-39455560)
chr5 (19-380)||(39460812-39461179)
chr5 (19-381)||(39457541-39457903)
chr5 (180-381)||(39463803-39464004)
chr5 (19-381)||(39470006-39470367)
chr5 (32-381)||(39476084-39476439)
chr5 (32-381)||(39483835-39484190)
chr5 (180-381)||(39487191-39487392)
chr5 (19-381)||(39472595-39472957)
chr5 (193-381)||(43311776-43311964)
chr5 (36-101)||(39487047-39487112)
chr5 (19-89)||(39464095-39464165)


Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 39451565 - 39451932
Alignment:
Q  19 ctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatcacacgcggttcactcctttttcaatcatcctgaatttacaagtttaccaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39451565 ctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatcacacgcggttcactcctttttcaatcatcctgaattaacaagtttaccaa 39451664  T
Q  119 ttatatatccggtaggacctatattaagtcctgagcccaaaaccaaggacgttgttggttctgatatcatcaactggcttgatgatcaacctctttcttc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39451665 ttatatatccggtaggacctatattaagtcctgagcccaaaaccaaggacgttgttggttctgatatcatcaactggcttgatgatcaacctctttcttc 39451764  T
Q  219 tgtagttttcctctgctttgggagcaggggttgtttcgatgaggatcaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatgg 318  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39451765 tgttgttttcctctgctttgggagcaggggttgtttcgatgaggaccaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatgg 39451864  T
Q  319 tctctccgtaaaccagcaccaaagggcgccatggctgcaccttctgattacactctttctgatctgtg 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39451865 tctctccgtaaaccagcaccaaagggcgccatggctgcaccttctgattacactctttctgatctgtg 39451932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 39455192 - 39455560
Alignment:
Q  19 ctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatcacacgcggttcactcctttttcaatcatcctgaatttacaagtttaccaa 118  Q
    ||||||||||||||||| || |||||||||||||||||||| || ||||| || ||||||||||||||||||  |||||||||||| |||||||||||||    
T  39455192 ctcaagaatgccgatggaatcatagtaaattcatttgaagatcttgaatctcatgcggttcactcctttttctctcatcctgaattaacaagtttaccaa 39455291  T
Q  119 ttatatatccggtaggacctatattaagtcctgagcccaaaaccaaggacgttgttggttctgatatcatcaactggcttgatgatcaacctctttcttc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  39455292 ttatatatccggtaggacctatattaagtcctgagcccaaaaccaaggacattgttggttctgatatcatcaagtggcttgatgatcaacctctttcctc 39455391  T
Q  219 tgtagttttcctctgctttgggagcaggggttgtttcgatgaggatcaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatgg 318  Q
     || |||||||| ||||| || ||||  |||||||| |||||||||||||||||||||||||||  ||||||||||||||||  | |||||||| |||||    
T  39455392 cgtcgttttcctttgcttcggaagcaaaggttgttttgatgaggatcaggttaaggagatcgcatgtgctattgagaatagtaagtcccacttcatatgg 39455491  T
Q  319 tctctccgtaaaccagcacc-aaagggcgccatggctgcaccttctgattacactctttctgatctgtg 386  Q
    |||||||||||||| | ||| || |||||||| ||||||||||||||||||||||||||||||| ||||    
T  39455492 tctctccgtaaacctgtaccgaaggggcgccagggctgcaccttctgattacactctttctgatttgtg 39455560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 19 - 380
Target Start/End: Original strand, 39460812 - 39461179
Alignment:
Q  19 ctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatcacacgcggttcactcctttttcaatcatcctgaatttacaagtttaccaa 118  Q
    |||||||| ||  |||| |||||||||||||||||||||||||||||||| || || ||||| || ||||||  ||| |||||  |  | ||||||||      
T  39460812 ctcaagaaagcaaatggtattatagtaaattcatttgaagagctagaatcccatgcagttcaatcatttttctctcaccctgatctagctagtttaccgg 39460911  T
Q  119 ttatatatccggtaggacctatattaagtcctgagcccaaaaccaaggacgttgttggttc---tgatatcatcaactggcttgatgatcaacctctttc 215  Q
    |||| ||||||| |||||| ||  |||  |||||||||||||||||||     ||||||||   |||||||||||| |||||||||||||||||||||||    
T  39460912 ttatttatccggcaggacccattataaaccctgagcccaaaaccaagggaacagttggttcagatgatatcatcaagtggcttgatgatcaacctctttc 39461011  T
Q  216 ttctgtagttttcctctgctttgggagcaggggttgtttcgatgaggatcaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgta 315  Q
     || ||||||||||||||||||||||  ||||||   ||||||||||||||| ||||||||||||||||||| |||||| ||||||| | ||| ||| ||    
T  39461012 ctccgtagttttcctctgctttgggactaggggtaccttcgatgaggatcagattaaggagatcgcacatgccattgaggatagtggcgtccatttcata 39461111  T
Q  316 tggtctctccgtaaaccagcaccaaaggg---cgccatggctgcaccttctgattacactctttctga 380  Q
    |||||||| ||||||||   ||| |||||   |||||||| |||||| ||||||||| ||||| ||||    
T  39461112 tggtctcttcgtaaacccaaaccgaagggtgtcgccatggttgcaccctctgattactctcttactga 39461179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 39457903 - 39457541
Alignment:
Q  19 ctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatcacacgcggttcactcctttttcaatcatcctgaatttacaagtttaccaa 118  Q
    ||||||||||| |||| |||||| ||||||||||||||||||||||||||  | || |||||||||||| ||  |||||||||  |  || ||||||| |    
T  39457903 ctcaagaatgctgatgccattattgtaaattcatttgaagagctagaatcctatgccgttcactcctttgtctctcatcctgatctagcaggtttaccca 39457804  T
Q  119 ttatatatccggtaggacctatattaagtcctgagcccaaaaccaaggacgttgttggttctga---tatcatcaactggcttgatgatcaacctctttc 215  Q
    |   ||||||||||||||| |||||||  ||  ||||||||||||||  ||   ||| ||||||   |||  |||| ||||||||||||||||||| |||    
T  39457803 t---atatccggtaggaccaatattaaaccccaagcccaaaaccaagagcgccattgattctgacgatattgtcaagtggcttgatgatcaacctccttc 39457707  T
Q  216 ttctgtagttttcctctgctttgggagcaggggttgtttcgatgaggatcaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgta 315  Q
     || | ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||| | |||| | ||||||| ||||| ||  || ||     
T  39457706 ctcggaagttttcctctgcttcgggagcagggggtttttcgatgaggatcaggttaaggagatcgcccttgctgtagagaatactggggtccgatttgtg 39457607  T
Q  316 tggtctctccgtaaaccagcaccaaagggcgccatggctgcaccttctgattacactctttctgat 381  Q
    |||||||| ||||||||| |||| |||| | |||||  ||| || |||||||||||||||||||||    
T  39457606 tggtctctacgtaaaccaccaccgaaggacaccatgaatgcgccatctgattacactctttctgat 39457541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 180 - 381
Target Start/End: Complemental strand, 39464004 - 39463803
Alignment:
Q  180 tgatatcatcaactggcttgatgatcaacctctttcttctgtagttttcctctgctttgggagcaggggttgtttcgatgaggatcaggttaaggagatc 279  Q
    |||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||| |||||||| |||| ||||||||| |||||||||||||||||     
T  39464004 tgatatcatcaagtggcttgatgatcaacctccttcctcagtagttttcctctgcttcgggagcagaggttctttcgatgaagatcaggttaaggagatt 39463905  T
Q  280 gcacatgctattgagaatagtggggcccacttcgtatggtctctccgtaaaccagcaccaaagggcgccatggctgcaccttctgattacactctttctg 379  Q
    |||| ||||||||||||||||||||| | ||| || |||||||| ||||||||  |||||||||||||||||  ||| || ||||||||| |||||||||    
T  39463904 gcacttgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaagggcgccatgattgcgccatctgattaccctctttctg 39463805  T
Q  380 at 381  Q
    ||    
T  39463804 at 39463803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 39470367 - 39470006
Alignment:
Q  19 ctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatcacacgcggttcactcctttttcaatcatcctgaatttacaagtttaccaa 118  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||  | ||||||||||||||||||  |||||| ||| |  |  ||||| | |    
T  39470367 ctcaagaatgccgatggcattattgtcaattcatttgaagagctagaatcctatgcggttcactcctttttctctcatcccgaactagctggtttatcca 39470268  T
Q  119 ttatatatccggtaggacctatattaagtcctgagcccaaaaccaaggacgttgttggttctga---tatcatcaactggcttgatgatcaacctctttc 215  Q
    |   ||||||  ||||||| |||||||  |  |||||||||||||||| |   |||| ||||||   |||  |||| |||||||||||||| |||| |||    
T  39470267 t---atatccaataggacccatattaaacctagagcccaaaaccaagggcaccgttgattctgacgatattgtcaagtggcttgatgatcagcctccttc 39470171  T
Q  216 ttctgtagttttcctctgctttgggagcaggggttgtttcgatgaggatcaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgta 315  Q
     || ||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||||||| |||| | ||||||| ||||| ||   | ||     
T  39470170 ctcggtagttttcctctgcttcgggagca-gggttttttcgatgaggatcaggttaaggggatcgcacttgctgtagagaatactggggtccgtattgtg 39470072  T
Q  316 tggtctctccgtaaaccagcaccaaagggcgccatggctgcaccttctgattacactctttctgat 381  Q
    |||||||| ||||||||| |||| |||||| |||||| ||| || ||||||||| |||||||||||    
T  39470071 tggtctctacgtaaaccaccacctaagggcaccatggttgcgccatctgattaccctctttctgat 39470006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 32 - 381
Target Start/End: Original strand, 39476084 - 39476439
Alignment:
Q  32 atggcattatagtaaattcatttgaagagctagaatcacacgcggttcactcctttttcaatcatcctgaatttacaagtttaccaattatatatccggt 131  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||  |||||||||  |  |   | |||   | |||||||||||    
T  39476084 atggcattatagtaaactcatttgaagagctagaatcacatgcggttcactcttttttctctcatcctgatctatcggatatac---tgatatatccggt 39476180  T
Q  132 aggacctatattaagtcctgagcccaaaaccaaggacgttgttgg------ttctgata---tcatcaactggcttgatgatcaacctctttcttctgta 222  Q
     |||||| ||||||  | |||||||||||| |||| |  |||||       |||||||    | || || ||||||||||||||||||| ||| || |||    
T  39476181 gggacctttattaaaccttgagcccaaaacaaagggcactgttgacgctgattctgatgatgtaatgaagtggcttgatgatcaacctccttcctccgta 39476280  T
Q  223 gttttcctctgctttgggagcaggggttgtttcgatgaggatcaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatggtctc 322  Q
    |||||||||||||| ||||| ||||||| ||| ||||| ||||||||||||||||||||||||||| |||||||||||||||| | |||||| |||||||    
T  39476281 gttttcctctgcttcgggagtaggggttattttgatgaagatcaggttaaggagatcgcacatgctgttgagaatagtggggcacgcttcgtgtggtctc 39476380  T
Q  323 tccgtaaaccagcaccaaagggcgccatggctgcaccttctgattacactctttctgat 381  Q
    | ||||||||  || |||||||| | ||||||||||| || |||||| |||||| ||||    
T  39476381 tgcgtaaacctccagcaaagggcactatggctgcaccctcggattaccctctttatgat 39476439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 32 - 381
Target Start/End: Original strand, 39483835 - 39484190
Alignment:
Q  32 atggcattatagtaaattcatttgaagagctagaatcacacgcggttcactcctttttcaatcatcctgaatttacaagtttaccaattatatatccggt 131  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||| ||  |  |   | |||  ||   |||||||||    
T  39483835 atggcattatagtaaattcattttaagagctagaatctcacgcggttcactcttttttcactcatccagatctatcggatatacagat---atatccggt 39483931  T
Q  132 aggacctatattaagtcctgagcccaaaaccaaggacgttgttgg------ttctgat---atcatcaactggcttgatgatcaacctctttcttctgta 222  Q
     |||||| ||||||  |||||||| ||||| |||| |  |||||       |||||||   || || || |||||| || ||||||||| ||| || |||    
T  39483932 gggacctttattaaaccctgagcctaaaacaaagggcactgttgacgctgattctgatgatataatgaagtggcttcataatcaacctccttcctccgta 39484031  T
Q  223 gttttcctctgctttgggagcaggggttgtttcgatgaggatcaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatggtctc 322  Q
    |||||||||||||||||||| ||||||| ||| ||||| ||||||||||||||||||||||||| | |||||||||||||||| | |||||| |||||||    
T  39484032 gttttcctctgctttgggagtaggggttattttgatgaagatcaggttaaggagatcgcacatgttgttgagaatagtggggcacgcttcgtgtggtctc 39484131  T
Q  323 tccgtaaaccagcaccaaagggcgccatggctgcaccttctgattacactctttctgat 381  Q
    | ||||||||   |  ||||||| ||||||||||||| ||||||||| |||||| ||||    
T  39484132 tgcgtaaacctctagtaaagggcaccatggctgcaccctctgattactctctttatgat 39484190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 180 - 381
Target Start/End: Original strand, 39487191 - 39487392
Alignment:
Q  180 tgatatcatcaactggcttgatgatcaacctctttcttctgtagttttcctctgctttgggagcaggggttgtttcgatgaggatcaggttaaggagatc 279  Q
    |||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||| ||||||||||| | ||||||||||||||||||||| |||||     
T  39487191 tgatatcatcaagtggcttgatgatcaacctccttcctcggtagttttcctctgcttcgggagcaggggctctttcgatgaggatcaggttaaagagatt 39487290  T
Q  280 gcacatgctattgagaatagtggggcccacttcgtatggtctctccgtaaaccagcaccaaagggcgccatggctgcaccttctgattacactctttctg 379  Q
    |||||||||||||||||| |||| ||||  || || |||||||| ||||||||  |||| |||||   ||||| | |||| ||||||||| |||||||||    
T  39487291 gcacatgctattgagaattgtggagcccgttttgtgtggtctctgcgtaaaccctcaccgaagggaatcatggtttcaccctctgattaccctctttctg 39487390  T
Q  380 at 381  Q
    ||    
T  39487391 at 39487392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 381
Target Start/End: Original strand, 39472595 - 39472957
Alignment:
Q  19 ctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatcacacgcggttcactcctttttcaatcatcctgaatttacaagtttaccaa 118  Q
    |||||||| || |||||| ||||||||||||||||||||||||||||||| ||||| ||||||||  |||    | ||||||      |  |||||||      
T  39472595 ctcaagaacgctgatggctttatagtaaattcatttgaagagctagaatcccacgcagttcactcgatttcatctgatcctggtccagctggtttacc-- 39472692  T
Q  119 ttatatatccggtaggacctatattaagtcctgagcccaaaaccaaggacgttgttggttctgat---atcatcaactggcttgatgatcaacctctttc 215  Q
     ||||||||||||||| || ||| | |  |  |||||||||||||||| |   |||| ||| |||   |||||||| ||||||||||||||||||   ||    
T  39472693 -tatatatccggtagggcccatactgaacctggagcccaaaaccaagggcaccgttgattccgatgacatcatcaagtggcttgatgatcaacctgcatc 39472791  T
Q  216 ttctgtagttttcctctgctttgggagcaggggttgtttcgatgaggatcaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgta 315  Q
     || ||||||||||||||||| || || | ||||| |||||| ||||||||||||| | |||| |||   ||||||||||||||||||||||  ||| ||    
T  39472792 ctcagtagttttcctctgcttcggaagtatgggttctttcgacgaggatcaggttacgcagattgcatgcgctattgagaatagtggggcccggttcata 39472891  T
Q  316 tggtctctccgtaaaccagcaccaaagggcgccatggctgcaccttctgattacactctttctgat 381  Q
    |||||||| ||||||||  ||||  ||||| |||||||  | || ||||||||| |||||| ||||    
T  39472892 tggtctcttcgtaaacctccaccggagggcaccatggcctcgccctctgattaccctctttttgat 39472957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 193 - 381
Target Start/End: Complemental strand, 43311964 - 43311776
Alignment:
Q  193 tggcttgatgatcaacctctttcttctgtagttttcctctgctttgggagcaggggttgtttcgatgaggatcaggttaaggagatcgcacatgctattg 292  Q
    ||||| ||||| ||||||||||| || |||||||  || ||||||||||||| ||||| |||||||||||||||  ||| |||||| ||  |||||||||    
T  43311964 tggctcgatgaccaacctctttcgtccgtagtttatctttgctttgggagcaagggttctttcgatgaggatcaaattagggagattgcgtatgctattg 43311865  T
Q  293 agaatagtggggcccacttcgtatggtctctccgtaaaccagcaccaaagggcgccatggctgcaccttctgattacactctttctgat 381  Q
    |||| |||| ||| | |||| | |||||||| || |||||  |||| |||||  |||||| ||   | ||||||||| |||||||||||    
T  43311864 agaaaagtgaggctcgcttcctgtggtctctgcgaaaacccccaccgaagggaaccatgggtgagacatctgattactctctttctgat 43311776  T

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Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 39487047 - 39487112
Alignment:
Q  36 cattatagtaaattcatttgaagagctagaatcacacgcggttcactcctttttcaatcatcctga 101  Q
    ||||||||||||||||||||||||| |||||||||| || ||||| |||||||||  |||||||||    
T  39487047 cattatagtaaattcatttgaagagttagaatcacatgctgttcaatcctttttctctcatcctga 39487112  T

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Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 39464165 - 39464095
Alignment:
Q  19 ctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatcacacgcggttcactccttttt 89  Q
    |||||||| || |||||  ||||||||||||||||||||||||||||||| || || ||||| || |||||    
T  39464165 ctcaagaaggctgatggttttatagtaaattcatttgaagagctagaatcccatgcagttcattcattttt 39464095  T

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