View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14618_low_6 (Length: 352)
Name: NF14618_low_6
Description: NF14618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14618_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 176 - 336
Target Start/End: Complemental strand, 223721 - 223564
Alignment:
| Q |
176 |
ttagaatgtgaagtaacctttgaaactcatttcactttattattattatttgcacaagtgaacaaacaatgcaggctcgccggagaagctctgtccggcc |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
223721 |
ttagaatgtgaagtaacctttgaaactcatttcactttattattatt---tgcacaagtgaacaaacaatgcaggctcgccggagaagctctgtccggcc |
223625 |
T |
|
| Q |
276 |
accggcgccggagaaagattctaaacattttatgaaagccatccttccctcacccattcat |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
223624 |
accggcgccggagaaagattctaaacattttatgaaagccatccttccctcacccattcat |
223564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 244 - 336
Target Start/End: Complemental strand, 218448 - 218356
Alignment:
| Q |
244 |
atgcaggctcgccggagaagctctgtccggccaccggcgccggagaaagattctaaacattttatgaaagccatccttccctcacccattcat |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
218448 |
atgcaggctcgccggagaagctctgtccggccaccggtggcggagaaggattctaaacattttatgaaagccatccttccctcagccattcat |
218356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 199291 - 199215
Alignment:
| Q |
241 |
acaatgcaggctcgccggagaagctctgtccggccaccggcgccggagaaagattctaaacattttatgaaagccat |
317 |
Q |
| |
|
||||||||| ||| ||||||||| | || |||| |||||||||||||||||| || || ||||||||||||||||| |
|
|
| T |
199291 |
acaatgcagcctcaccggagaagatgtggccggtcaccggcgccggagaaagcatcgaagcattttatgaaagccat |
199215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 212354 - 212309
Alignment:
| Q |
278 |
cggcgccggagaaagattctaaacattttatgaaagccatccttcc |
323 |
Q |
| |
|
||||| ||||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
212354 |
cggcggcggagaaagattcaaagcattttatgaaagccatacttcc |
212309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 281 - 336
Target Start/End: Complemental strand, 29839364 - 29839309
Alignment:
| Q |
281 |
cgccggagaaagattctaaacattttatgaaagccatccttccctcacccattcat |
336 |
Q |
| |
|
|||||||||| || || |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29839364 |
cgccggagaaggaatcaaaacattttatgaaagccatacttccctcacccattcat |
29839309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 336
Target Start/End: Complemental strand, 3809431 - 3809336
Alignment:
| Q |
242 |
caatgcaggctcgccggagaagctctgtccggccaccggcgccggagaaag-attctaaacattttatgaaagccatccttccctcacccattcat |
336 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| | || |||||||||||| | | || ||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
3809431 |
caatgcagcctcgccggagaaggtctgtccagtcattggcgccggagaaggtaatcaaaacattttctgaaagccataattccctcacccattcat |
3809336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University