View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14619_high_1 (Length: 369)

Name: NF14619_high_1
Description: NF14619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14619_high_1
NF14619_high_1
[»] chr2 (9 HSPs)
chr2 (15-351)||(18535650-18535986)
chr2 (15-351)||(24806631-24806969)
chr2 (15-351)||(24808487-24808825)
chr2 (15-351)||(22300244-22300580)
chr2 (15-157)||(31974035-31974177)
chr2 (15-132)||(22299690-22299807)
chr2 (15-192)||(44793316-44793492)
chr2 (15-126)||(44792615-44792725)
chr2 (15-76)||(24806089-24806151)
[»] chr3 (11 HSPs)
chr3 (15-351)||(47418324-47418660)
chr3 (15-351)||(5554139-5554475)
chr3 (15-351)||(16346634-16346970)
chr3 (15-351)||(23460202-23460538)
chr3 (15-351)||(25531636-25531972)
chr3 (15-284)||(5553198-5553467)
chr3 (15-247)||(16022604-16022836)
chr3 (15-351)||(47566476-47566811)
chr3 (50-210)||(32570515-32570674)
chr3 (63-109)||(25532821-25532867)
chr3 (15-212)||(2683485-2683681)
[»] scaffold0025 (1 HSPs)
scaffold0025 (15-351)||(54856-55193)
[»] chr7 (9 HSPs)
chr7 (15-351)||(40998567-40998903)
chr7 (15-351)||(41000426-41000763)
chr7 (15-297)||(23446662-23446944)
chr7 (15-351)||(7842676-7843012)
chr7 (15-351)||(9647283-9647619)
chr7 (18-351)||(9595784-9596117)
chr7 (18-351)||(9646747-9647080)
chr7 (15-58)||(24790122-24790165)
chr7 (15-58)||(24790156-24790199)
[»] chr4 (15 HSPs)
chr4 (15-351)||(9398967-9399303)
chr4 (15-351)||(15017991-15018324)
chr4 (15-351)||(15019631-15019964)
chr4 (15-351)||(13518308-13518644)
chr4 (15-351)||(39488498-39488834)
chr4 (18-201)||(13517922-13518105)
chr4 (15-192)||(11098499-11098677)
chr4 (15-91)||(46690508-46690584)
chr4 (288-351)||(9166926-9166989)
chr4 (15-102)||(21377201-21377287)
chr4 (15-128)||(42873000-42873112)
chr4 (15-103)||(18281342-18281429)
chr4 (17-88)||(22473681-22473750)
chr4 (114-188)||(30875006-30875080)
chr4 (36-150)||(19455904-19456018)
[»] scaffold0018 (1 HSPs)
scaffold0018 (15-351)||(431-769)
[»] chr8 (8 HSPs)
chr8 (15-351)||(17278023-17278358)
chr8 (15-351)||(8366107-8366443)
chr8 (15-195)||(17277409-17277589)
chr8 (15-126)||(6778228-6778338)
chr8 (15-192)||(17857163-17857339)
chr8 (15-126)||(23016334-23016444)
chr8 (15-58)||(17277677-17277720)
chr8 (15-104)||(23016690-23016778)
[»] scaffold0013 (1 HSPs)
scaffold0013 (15-349)||(241046-241380)
[»] chr5 (9 HSPs)
chr5 (15-351)||(244789-245122)
chr5 (15-351)||(29949587-29949920)
chr5 (15-351)||(29951225-29951558)
chr5 (15-126)||(38936717-38936828)
chr5 (15-91)||(21352695-21352771)
chr5 (18-202)||(16780615-16780797)
chr5 (15-79)||(21352606-21352670)
chr5 (34-132)||(23660940-23661038)
chr5 (34-132)||(23797532-23797630)
[»] chr1 (11 HSPs)
chr1 (15-351)||(24157402-24157737)
chr1 (15-351)||(36233308-36233641)
chr1 (18-349)||(20189147-20189478)
chr1 (15-351)||(20190778-20191114)
chr1 (11-284)||(48462802-48463074)
chr1 (15-202)||(36233853-36234040)
chr1 (13-225)||(48463831-48464040)
chr1 (15-351)||(20759106-20759432)
chr1 (15-187)||(40553903-40554074)
chr1 (15-126)||(40554628-40554738)
chr1 (15-104)||(31390149-31390237)
[»] scaffold0026 (2 HSPs)
scaffold0026 (15-351)||(86583-86915)
scaffold0026 (15-118)||(643-746)
[»] scaffold0146 (1 HSPs)
scaffold0146 (15-186)||(31591-31762)
[»] scaffold0269 (2 HSPs)
scaffold0269 (148-351)||(1751-1954)
scaffold0269 (15-106)||(1962-2051)
[»] scaffold0096 (1 HSPs)
scaffold0096 (15-126)||(22399-22510)
[»] scaffold0021 (2 HSPs)
scaffold0021 (15-132)||(17657-17774)
scaffold0021 (15-132)||(27188-27305)
[»] scaffold0094 (1 HSPs)
scaffold0094 (15-125)||(13473-13582)
[»] scaffold0139 (1 HSPs)
scaffold0139 (15-195)||(4225-4404)
[»] scaffold0002 (1 HSPs)
scaffold0002 (15-149)||(375259-375392)
[»] scaffold0321 (1 HSPs)
scaffold0321 (15-192)||(5220-5396)
[»] scaffold0180 (1 HSPs)
scaffold0180 (15-192)||(11306-11481)
[»] chr6 (2 HSPs)
chr6 (15-54)||(12037064-12037103)
chr6 (15-52)||(12037016-12037053)
[»] scaffold0359 (1 HSPs)
scaffold0359 (15-59)||(8902-8946)


Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 18535986 - 18535650
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||    
T  18535986 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtcttattttcgtaggtcatgatatgtctgtcttgttttggctata 18535887  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    |||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18535886 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacaaaattctctacatttcatctgtttgagtcaagagcaaattcggaa 18535787  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18535786 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 18535687  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    ||||||| |||||||||||||||||||||||||||||    
T  18535686 aataagcattcacaaatcaatgtgcaaatgaatatgt 18535650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 24806969 - 24806631
Alignment:
Q  15 aagaataataaa-gtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttat 113  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||    
T  24806969 aagaataataaaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttatttttgtaggtcatgatatgtctgtcttgttttggctat 24806870  T
Q  114 atctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcgga 213  Q
    ||||||||||| ||||||| |||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||  |||||| |||||||||    
T  24806869 atctggagctccggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgatccaagagcaaattcgga 24806770  T
Q  214 atatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtcta-gcc 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  24806769 atatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaattgtaacgtctaggcc 24806670  T
Q  313 ataataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  24806669 ataataagccttcaaaaatcaatgtgcaaatgaatatgt 24806631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 24808825 - 24808487
Alignment:
Q  15 aagaataata-aagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttat 113  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||    
T  24808825 aagaataatagaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttatttttgtaggtcatgatatgtctgtcttgttttggctat 24808726  T
Q  114 atctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcgga 213  Q
    ||||||||||| ||||||| |||| | |||||||||||||| || |||||||||| ||||||||||||||||||||||||||  |||||| |||||||||    
T  24808725 atctggagctccggatgtccgtttcaggtgatctttaactcattggaaagcttacgaaattctctacatttcatctgtttgatccaagagcaaattcgga 24808626  T
Q  214 atatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtcta-gcc 312  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||    
T  24808625 atatttaatggttcagaatgagctgtaattagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaattgtaacggctaggcc 24808526  T
Q  313 ataataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  24808525 ataataagccttcaaaaatcaatgtgcaaatgaatatgt 24808487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 22300580 - 22300244
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||    
T  22300580 aagaataataaattcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgtttttgctata 22300481  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    || ||||||||||||||| |||||| ||||||||||||| ||| ||||||||||  ||||||||||||||||||||||||| ||||||| ||||||||||    
T  22300480 tccggagctctggatgtccgtttgaggtgatctttaacttgttggaaagcttacggaattctctacatttcatctgtttgactcaagagcaaattcggaa 22300381  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    |||||||||||  | |||||| ||||||| ||| ||||||||||||| ||  ||||||||||||||||||||||||||||||| ||||||||||||  ||    
T  22300380 tatttaatggtttaaaatgagttgtaagttgaaaacgtggttaaagtgtgcaagctgaagaattaaaggtggtgtttgtggaattgtaacgtctagaaat 22300281  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    |||||||||||||||||||||||||||||||||||||    
T  22300280 aataagccttcacaaatcaatgtgcaaatgaatatgt 22300244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 157
Target Start/End: Complemental strand, 31974177 - 31974035
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||    
T  31974177 aagaataataaagtcattatggaataaaagaacctaattaattttgggttcaaagttttattttcgtaggtcatgatatgtttgtcttgttttggctata 31974078  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgtt 157  Q
    || |||| |||||||||| |||||| |||||||||||||||||    
T  31974077 tcgggagttctggatgtccgtttgaggtgatctttaactcgtt 31974035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 22299690 - 22299807
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||    
T  22299690 aagaataataaattcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttgcctata 22299789  T
Q  115 tctggagctctggatgtc 132  Q
    ||||||||| ||||||||    
T  22299790 tctggagctttggatgtc 22299807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 44793492 - 44793316
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||| ||||| ||||||||||||| ||||||| |||||| |||||| | ||||||||||||||||| || | |||||||||| ||  | |||    
T  44793492 aagaataataaattcattatggaataaaagaatcaaattatttttgg-ttcaaattgttattttcgtaggtcattatgtatctgtcttgtattcatcata 44793394  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtt 192  Q
    ||| ||||||||||  || | |||| ||||||||| |  |||| |||||  |||||| |  |||||||||||| ||||    
T  44793393 tctagagctctggaactccgattgaggtgatctttgaagcgttggaaagggtacaaattcatctacatttcatatgtt 44793316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 44792615 - 44792725
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | ||||||| ||||||||| || | |||||||||| ||  | |||    
T  44792615 aagaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttatttttgtaggtcattatgtatctgtcttgtattcatcata 44792713  T
Q  115 tctggagctctg 126  Q
    ||| ||||||||    
T  44792714 tctagagctctg 44792725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 24806089 - 24806151
Alignment:
Q  15 aagaataataaa-gtcattgtggaataaaagaaccaaattaattttgggttcaaaattttatt 76  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||  |||||||    
T  24806089 aagaataataaaagtcattgtggaataaaagaaccaatttaattttgggttcaatgttttatt 24806151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 47418660 - 47418324
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||    
T  47418660 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtcttattttcgtaggtcatgatatgtctgtcttgttttggctata 47418561  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    |||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  47418560 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacaaaattctctacatttcatctgtttgagtcaagagcaaattcagaa 47418461  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47418460 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 47418361  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    ||||||| |||||||||||||||||||||||||||||    
T  47418360 aataagcattcacaaatcaatgtgcaaatgaatatgt 47418324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 5554475 - 5554139
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5554475 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggctata 5554376  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    |||||||||||||||||| |||||| ||||||||||||||||| || ||||||| |||||||||||||||||||||||||| ||||||| ||||||||||    
T  5554375 tctggagctctggatgtccgtttgaggtgatctttaactcgttggatagcttacgaaattctctacatttcatctgtttgattcaagagcaaattcggaa 5554276  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5554275 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaattgtaacgtctagccat 5554176  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    |||||||||||||||||||||||| ||||||||||||    
T  5554175 aataagccttcacaaatcaatgtgtaaatgaatatgt 5554139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 16346634 - 16346970
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||    
T  16346634 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtcttattttcgtaggtcatgatatgtctgtcttgttttggctata 16346733  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    |||||||||||||||||| |||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||| |||    
T  16346734 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgagtcaagagcaaattcagaa 16346833  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16346834 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 16346933  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    ||||||| |||||||||||||||||||||||||||||    
T  16346934 aataagcattcacaaatcaatgtgcaaatgaatatgt 16346970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 23460202 - 23460538
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||    
T  23460202 aagaataataaagtcattgtagaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcattatatgtctgtcttgttttggctata 23460301  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    ||||||||||||||| || |||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||    
T  23460302 tctggagctctggatatccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgattcaagagcaaattcggaa 23460401  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23460402 tatttaatggtgcagaatgagctgtaggtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaattgtaacgtctagccat 23460501  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    |||||||||||||||||||||||||||||||||||||    
T  23460502 aataagccttcacaaatcaatgtgcaaatgaatatgt 23460538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 25531636 - 25531972
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||    
T  25531636 aagaataataaattcattgtagaaaaaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttgactata 25531735  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    |||||||||||||||||| |||||| ||||||||||||||||| |||||||||   ||||||||||||||||||||||||| | ||||| |||||| |||    
T  25531736 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttatggaattctctacatttcatctgtttgacttaagagcaaattcagaa 25531835  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    |||||||||||  | |||||| ||||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||  ||    
T  25531836 tatttaatggtttaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagctgaagaattaaaggtggtgtttgtggaattgtaacgtctagaaat 25531935  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    |||||||||||||||||||||||||||||||||||||    
T  25531936 aataagccttcacaaatcaatgtgcaaatgaatatgt 25531972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 284
Target Start/End: Original strand, 5553198 - 5553467
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  5553198 aagaataataaagtcattgtgaaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctatcttgttttggctata 5553297  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    |||||||||||||||||| |||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||| | ||||||| ||||||| ||    
T  5553298 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttaattcaagagcaaattcgaaa 5553397  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggt 284  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  5553398 tatttaatggtgcagaatgagctgtaagtagaagacgtggttgaagtatgttagttgaagaattaaaggt 5553467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 15 - 247
Target Start/End: Complemental strand, 16022836 - 16022604
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  16022836 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggtccaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 16022737  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    |||| ||||||||||||| |||||| ||| ||||||||||||| |||||||||| || ||||||||||||| ||||||||| ||||||  ||||||||||    
T  16022736 tctgaagctctggatgtccgtttgaggtggtctttaactcgttggaaagcttacgaagttctctacatttcgtctgtttgactcaagatcaaattcggaa 16022637  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaa 247  Q
    |||||| ||||| |||||||||  |||||||||    
T  16022636 tatttagtggtgtagaatgagcaataagtagaa 16022604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 47566476 - 47566811
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatat--gtctgtcttgttttggtta 112  Q
    ||||||||||||||||||||||||||||||||   | |||||||||  || |||||||||||||||||| |||||||||  || |||||||| |||| ||    
T  47566476 aagaataataaagtcattgtggaataaaagaattgatttaattttgattt-aaaattttattttcgtagatcatgatatatgtttgtcttgtcttggcta 47566574  T
Q  113 tatctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcgg 212  Q
    ||||||||||| |||||||  | |||| ||||||||||| ||||| |||||||||||||||||| |||||||| ||||||||| ||  ||| ||||||      
T  47566575 tatctggagctatggatgttcgattgaggtgatctttaattcgttggaaagcttacaaaattctttacatttcgtctgtttgactc--gagcaaattcaa 47566672  T
Q  213 aatatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagcc 312  Q
    |||||||||||||| |||||||||||||||| ||||||||| ||||||| ||  || |||||||||||| ||||||||||||||| |||||  |||||      
T  47566673 aatatttaatggtgtagaatgagctgtaagttgaagacgtgattaaagtgtgcaagttgaagaattaaaagtggtgtttgtggaattgtaatttctagaa 47566772  T
Q  313 ataataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  47566773 ataataagctttcacaaatcaatgtgcaaatgaatatgt 47566811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 32570515 - 32570674
Alignment:
Q  50 aattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttatatctggagctctggatgtctgtttgaagtgatcttt 149  Q
    |||||||||||| ||| |||| |||||||||||| |||| |||||||| | |||||||   ||||||||||| |||||||||    |||| |||||||||    
T  32570515 aattaattttgg-ttctaaatgttattttcgtagatcattatatgtctattttgtttttactatatctggagttctggatgttatattgaggtgatcttt 32570613  T
Q  150 aactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattc 210  Q
    || ||||| |||||||||||||||| |||||||||  | ||||||| || |||| ||||||    
T  32570614 aattcgttggaaagcttacaaaattatctacattttgtatgtttgactcgagagcaaattc 32570674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 25532867 - 25532821
Alignment:
Q  63 ttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttgg 109  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  25532867 ttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttgg 25532821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 2683485 - 2683681
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||| ||||| |||||||||| || ||||||||||||  ||||||| | ||||||| |||| |||| | ||||||||||| ||||   ||||    
T  2683485 aagaataataaaatcattttggaataaaaaaatcaaattaatttt-tgttcaaagtgttatttttgtagatcataacatgtctgtcttattttatctata 2683583  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcgg 212  Q
    ||| |  || || ||||| | || || |||||||||| |||||  || | |||||||||| |||| ||||| |||||   | |||||| |||||||||    
T  2683584 tctaggactttgaatgtccgattcaaatgatctttaattcgttgaaatgattacaaaattatctatatttcgtctgtcgtattcaagaaaaaattcgg 2683681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 54856 - 55193
Alignment:
Q  15 aagaataataaa-gtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttat 113  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | |||    
T  54856 aagaataataaaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgctatgtctgtcttgttttcgctat 54955  T
Q  114 atctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcgga 213  Q
    ||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  54956 atctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacaaaattctctacatttcatctgtttgattcaagagcaaattcgga 55055  T
Q  214 atatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagcca 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  55056 atatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaattgtaacgtctagcca 55155  T
Q  314 taataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    ||||||||||||||||||||||||||||||||||||||    
T  55156 taataagccttcacaaatcaatgtgcaaatgaatatgt 55193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 40998903 - 40998567
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  40998903 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttattttggctata 40998804  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    |||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||  ||    
T  40998803 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacaaaattctctacatttcatctgtttgattcaagagcaaattcttaa 40998704  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  40998703 tatttaatggtgcaaaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttatggaattgtaacgtctagccat 40998604  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    ||||| |||||||||||||||||||||||||||||||    
T  40998603 aataatccttcacaaatcaatgtgcaaatgaatatgt 40998567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 41000763 - 41000426
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttatttt-cgtaggtcatgatatgtctgtcttgttttggttat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||    
T  41000763 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttatttttcgtaggtcatgatatgtcggtcttgttttggctat 41000664  T
Q  114 atctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcgga 213  Q
    ||||||||||||||||||| |||||| ||||||| ||||||||| |||||||| | |||||||||||||||||||||||||| ||||||| ||||||  |    
T  41000663 atctggagctctggatgtccgtttgaggtgatctctaactcgttggaaagcttgcgaaattctctacatttcatctgtttgattcaagagcaaattctta 41000564  T
Q  214 atatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagcca 313  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  41000563 atatttaatggtgcaaaatgagttgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttatggaattgtaacgtctagcca 41000464  T
Q  314 taataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    |||||| |||||||||||||||||||||||||||||||    
T  41000463 taataatccttcacaaatcaatgtgcaaatgaatatgt 41000426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 15 - 297
Target Start/End: Original strand, 23446662 - 23446944
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  23446662 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 23446761  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    |||||||||||||||||| |||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  23446762 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttaccaaattctctacatttcatctgtttgagtcaagagcaaattcggaa 23446861  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaa 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23446862 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaa 23446944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 7842676 - 7843012
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||    
T  7842676 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcaagatatgtctgttttgttttggttata 7842775  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    ||| |||||||||||||| |||||| ||||||||||||||||| |||||||||| ||||||| |||| |||||| |||||| ||||| | ||||||||||    
T  7842776 tctagagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctatacaattcatccgtttgactcaagtgcaaattcggaa 7842875  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    |||||||||||  | |||||| ||||||||||| ||||||||||||| ||| ||||| ||||||||||| ||||||||||||| ||||||||||||  ||    
T  7842876 tatttaatggtttaaaatgagttgtaagtagaaaacgtggttaaagtgtgtaagctggagaattaaaggaggtgtttgtggaattgtaacgtctagaaat 7842975  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    |||||||||||||||||||||||||||||||||||||    
T  7842976 aataagccttcacaaatcaatgtgcaaatgaatatgt 7843012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 9647619 - 9647283
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  9647619 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 9647520  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    |||||||||||||||||| |||||| ||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| ||||| | ||||||||||    
T  9647519 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaaacttacgaaattctctacatttcatctgtttgactcaagtgcaaattcggaa 9647420  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    |||||||||||  | |||||| ||||||| ||| ||||||||||| | ||| | ||||||||||||||| ||||||||||||| ||||||||||||  ||    
T  9647419 tatttaatggtttaaaatgagttgtaagttgaaaacgtggttaaattgtgtaacctgaagaattaaaggaggtgtttgtggaattgtaacgtctagaaat 9647320  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    ||| |||||| ||||||||||||||||||||||||||    
T  9647319 aatcagcctttacaaatcaatgtgcaaatgaatatgt 9647283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 9596117 - 9595784
Alignment:
Q  18 aataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttatatct 117  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||    
T  9596117 aataataaagttattgtggaataaaagaaccaaattaactttgggttcaaagttttattttcgtagatcatgatatgtctgtcttgttttggctatgtct 9596018  T
Q  118 ggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaatat 217  Q
    |||||||  |||||  |||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| | |||||||||||||    
T  9596017 ggagctcccgatgttcgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagtgcaaattcggaatat 9595918  T
Q  218 ttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccataat 317  Q
    |||||||   | |||||| ||||||| ||| ||||||||||||| ||| ||||| ||||||||||| ||||||||||||| ||||||||||||  |||||    
T  9595917 ttaatggcttaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagctggagaattaaaggaggtgtttgtggaattgtaacgtctagaaataat 9595818  T
Q  318 aagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    ||||||||||||||||||||||||||||||||||    
T  9595817 aagccttcacaaatcaatgtgcaaatgaatatgt 9595784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 9647080 - 9646747
Alignment:
Q  18 aataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttatatct 117  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||    
T  9647080 aataataaagttattgtggaataaaagaaccaaattaactttgggttcaaagttttattttcgtagatcatgatatgtctgtcttgttttggctatgtct 9646981  T
Q  118 ggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaatat 217  Q
    ||||||   |||||  |||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| | |||||||||||||    
T  9646980 ggagcttccgatgttcgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagtgcaaattcggaatat 9646881  T
Q  218 ttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccataat 317  Q
    |||||||   | |||||| ||||||| ||| ||||||||||||| ||| ||||||||||||||||| ||||||||||||| ||||||||||||  |||||    
T  9646880 ttaatggcttaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagctgaagaattaaaggaggtgtttgtggaattgtaacgtctagaaataat 9646781  T
Q  318 aagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    |||||||||||||||||||| |||||||||||||    
T  9646780 aagccttcacaaatcaatgtccaaatgaatatgt 9646747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 24790122 - 24790165
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattt 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  24790122 aagaataataaagtcattgtggaataaaagaaccaaattaattt 24790165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 24790199 - 24790156
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattt 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  24790199 aagaataataaagtcattgtggaataaaagaaccaaattaattt 24790156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 9399303 - 9398967
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  9399303 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 9399204  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    | |||||||||||||||| |||||| ||||||||||||||||| |||||||||| |||||||||||||||| ||||||||| ||||||| ||||||||||    
T  9399203 tatggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcgtctgtttgactcaagagcaaattcggaa 9399104  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    |||||||||||| |||||||  | |||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| |||    
T  9399103 tatttaatggtgtagaatgatatataagcagaagacgtggttaaagtgtgttagctgaagaattaaaggcggtgtttgtggaattgtaacgtctagacat 9399004  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    ||||||||||||||||| |||||||||||||||||||    
T  9399003 aataagccttcacaaataaatgtgcaaatgaatatgt 9398967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 15018324 - 15017991
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  15018324 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 15018225  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    |||||||||||||||||| |||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||  ||||||| ||    
T  15018224 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcgaaa 15018125  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    |||||||||||| | |||||| ||||||| ||| ||||||||||||| ||| |||||||||||||||   ||||||||||||| ||||||||||||  ||    
T  15018124 tatttaatggtgtaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagctgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaat 15018028  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    ||| |||||||||||||||||||||||||||||||||    
T  15018027 aattagccttcacaaatcaatgtgcaaatgaatatgt 15017991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 15019964 - 15019631
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  15019964 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 15019865  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    |||||||||||||||||| |||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||  ||||||| ||    
T  15019864 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcgaaa 15019765  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    |||||||||||| | |||||| ||||||| ||| ||||||||||||| ||| |||||||||||||||   ||||||||||||| ||||||||||||  ||    
T  15019764 tatttaatggtgtaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagctgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaat 15019668  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    ||| |||||||||||||||||||||||||||||||||    
T  15019667 aattagccttcacaaatcaatgtgcaaatgaatatgt 15019631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 13518644 - 13518308
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  13518644 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 13518545  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    |||||||||||||||||| |||||| ||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| ||||| | ||||||||||    
T  13518544 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaaacttacgaaattctctacatttcatctgtttgactcaagtgcaaattcggaa 13518445  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    |||||||||||  | |||||| ||||||| ||| ||||||||||| | ||| | ||||||||||||||||||||||||||||| ||||||||||||  ||    
T  13518444 tatttaatggtttaaaatgagttgtaagttgaaaacgtggttaaattgtgtaatctgaagaattaaaggtggtgtttgtggaattgtaacgtctagaaat 13518345  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    ||| |||||| ||||||||||||||||||||||||||    
T  13518344 aattagcctttacaaatcaatgtgcaaatgaatatgt 13518308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 39488834 - 39488498
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||    
T  39488834 aagaataataaattcattatggaataaaagaacctaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttattttggctata 39488735  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    ||||||||||| |||||| |||||| ||||||||||||||||| |||||||||| |||||||| ||| ||||||||||||| ||||||| ||| || |||    
T  39488734 tctggagctctagatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctccacaattcatctgtttgactcaagagcaaactcagaa 39488635  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    |||||||||||  | |||||| ||||||| ||| ||||||||||||| ||| |||||||||||||||||||||||||||| || ||||||||||||  ||    
T  39488634 tatttaatggtttaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagctgaagaattaaaggtggtgtttgtgaaattgtaacgtctagaaat 39488535  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    |||||| ||||||||||||||||||||||||||||||    
T  39488534 aataagtcttcacaaatcaatgtgcaaatgaatatgt 39488498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 13518105 - 13517922
Alignment:
Q  18 aataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttatatct 117  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||    
T  13518105 aataataaagttattgtggaataaaagaaccaaattaactttgggttcaaagttttattttcgtagatcatgatatgtctgtcttgttttggctatgtct 13518006  T
Q  118 ggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaag 201  Q
    ||||||   |||||  |||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||    
T  13518005 ggagcttccgatgttcgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaag 13517922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 11098499 - 11098677
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttg-ggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttat 113  Q
    |||||||||||| ||||| ||||||||||||| |||||| |||||  |||||||| | ||||||||||||||||| || | |||||||||| ||  | ||    
T  11098499 aagaataataaattcattatggaataaaagaatcaaatttattttttggttcaaattgttattttcgtaggtcattatgtatctgtcttgtattcatcat 11098598  T
Q  114 atctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtt 192  Q
    |||| ||||||||||  || | |||| ||||||||| |  |||| |||||  |||||| |  |||||||||||| ||||    
T  11098599 atctagagctctggaactccgattgaggtgatctttgaagcgttggaaagggtacaaattcatctacatttcatatgtt 11098677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 46690508 - 46690584
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgat 91  Q
    |||||||||||||||| |||||||||||||||| |||||||||||   || ||| ||||||||||||||||||||||    
T  46690508 aagaataataaagtcagtgtggaataaaagaactaaattaattttaaatttaaagttttattttcgtaggtcatgat 46690584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 288 - 351
Target Start/End: Original strand, 9166926 - 9166989
Alignment:
Q  288 gtttgtggaaatgtaacgtctagccataataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    |||||||||| ||||||||||||  ||||| |||||||||||||||||||||||||||||||||    
T  9166926 gtttgtggaattgtaacgtctagaaataattagccttcacaaatcaatgtgcaaatgaatatgt 9166989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 21377201 - 21377287
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtctt 102  Q
    |||||||||||||||| | |||||||||||||||||||| ||||| |||||| | ||||||||||||||||||| || | ||||||||    
T  21377201 aagaataataaagtcaatatggaataaaagaaccaaatt-atttttggttcagatttttattttcgtaggtcattatgtatctgtctt 21377287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 42873112 - 42873000
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | ||||||||||||||||| || | | |||||||| ||  | |||    
T  42873112 aagaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcattatgtatatgtcttgtattcatcata 42873014  T
Q  115 tctggagctctgga 128  Q
    ||| ||||||||||    
T  42873013 tctagagctctgga 42873000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 18281429 - 18281342
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttg 103  Q
    |||||||||||||||||| | ||||||||||| |||||| ||||| ||||||||   ||||||||||||||||| || | |||||||||    
T  18281429 aagaataataaagtcattatcgaataaaagaatcaaatt-atttttggttcaaatagttattttcgtaggtcattatgtatctgtcttg 18281342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 22473681 - 22473750
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcat 88  Q
    |||||||||||||||| ||||||||||||||||| ||  |||| |||||||| | |||||||||| ||||||    
T  22473681 gaataataaagtcattatggaataaaagaaccaattt--tttttggttcaaattgttattttcgttggtcat 22473750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 30875080 - 30875006
Alignment:
Q  114 atctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatc 188  Q
    |||| ||||||||||||||||||| | ||||||||||| ||||| ||||| ||| ||||   |||||||||||||    
T  30875080 atcttgagctctggatgtctgtttaacgtgatctttaattcgttggaaagtttaaaaaaaattctacatttcatc 30875006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 150
Target Start/End: Original strand, 19455904 - 19456018
Alignment:
Q  36 gaataaaa-gaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttatatctggagctctggatgtctg 134  Q
    |||||||| |||||||||||||||||| ||| || | ||||||| |||||| || |||||||||| ||||||| || |||||| ||| |||  |||| ||    
T  19455904 gaataaaatgaaccaaattaattttggtttc-aagtgttatttttgtaggtgattatatgtctgttttgtttttgtcatatctagagttctaaatgtttg 19456002  T
Q  135 tttgaagtgatcttta 150  Q
     || |||| |||||||    
T  19456003 attaaagtcatcttta 19456018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 769 - 431
Alignment:
Q  15 aagaataata-aagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttat 113  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||    
T  769 aagaataatagaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttatttttgtaggtcatgatatgtctgtcttgttttggctat 670  T
Q  114 atctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcgga 213  Q
    ||||||||||| ||||||| |||| | |||||||||||||| || |||||||||| ||||||||||||||||||||||||||  |||||| |||||||||    
T  669 atctggagctccggatgtccgtttcaggtgatctttaactcattggaaagcttacgaaattctctacatttcatctgtttgatccaagagcaaattcgga 570  T
Q  214 atatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtcta-gcc 312  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||    
T  569 atatttaatggttcagaatgagctgtaattagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaattgtaacggctaggcc 470  T
Q  313 ataataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  469 ataataagccttcaaaaatcaatgtgcaaatgaatatgt 431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 17278358 - 17278023
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| |||||||||||||||||||||||||| ||||    
T  17278358 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggtccaaagttt-attttcgtaagtcatgatatgtctgtcttgttttggctata 17278260  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    ||||||||||| |||||| |||||| |||||||||||||| || |||||||||| ||||| |||||||||| ||||||||| |||| || ||||||||||    
T  17278259 tctggagctctagatgtccgtttgaggtgatctttaactcattggaaagcttacgaaattttctacatttcgtctgtttgactcaaaagcaaattcggaa 17278160  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    |||||| ||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  17278159 tatttagtggtgtagaatgagctataagtagaagacgtggttaaagtgtgttagctgaagaattaaaggtggtgtttgtggaattgtaacgtctagacat 17278060  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    |||||||||||||||||||||||| ||||||||||||    
T  17278059 aataagccttcacaaatcaatgtgaaaatgaatatgt 17278023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 8366107 - 8366443
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  8366107 aagaataataaattcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 8366206  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    | |||||||||||||||| |||||| ||||||||||||||||| ||||||||||  |||||||||||||| |||| ||||| ||||||| ||||||||||    
T  8366207 tttggagctctggatgtccgtttgaggtgatctttaactcgtttgaaagcttacggaattctctacattttatctatttgactcaagagcaaattcggaa 8366306  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    ||||||| |||  | |||||| ||||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||  ||    
T  8366307 tatttaacggtttaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagctgaagaattaaaggtggtgtttgtggaattgtaacgtctagaaat 8366406  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    |||||||||||||||||||||||||||||||||||||    
T  8366407 aataagccttcacaaatcaatgtgcaaatgaatatgt 8366443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 17277409 - 17277589
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||| ||||    
T  17277409 aagaataataaagtcattgtggaataaaagaatcaaattaattttgggttcaaagttttatttttgtaggtcatgatatgtatgtcttgttttggctata 17277508  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttga 195  Q
    |||||||||||||||||| |||||| |||||||||||||| || ||||||||||  ||||||||||||||| |||||||||    
T  17277509 tctggagctctggatgtccgtttgaggtgatctttaactcattggaaagcttacggaattctctacatttcgtctgtttga 17277589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 6778338 - 6778228
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||| ||||||||||||||||||| |||||||||| ||||| || |||||||| |  | |||||||||||||||||||||||||| ||||    
T  6778338 aagaataataaagttattgtggaataaaagaaccgaattaatttt-ggttctaagttttatttacacatgtcatgatatgtctgtcttgttttggctata 6778240  T
Q  115 tctggagctctg 126  Q
    | ||||||||||    
T  6778239 tttggagctctg 6778228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 17857163 - 17857339
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||| ||||| ||||||||||||| ||||||| |||||| |||||| | ||||||||||||||||| || | |||||||||| ||  | |||    
T  17857163 aagaataataaattcattatggaataaaagaatcaaattatttttgg-ttcaaattgttattttcgtaggtcattatgtatctgtcttgtattcatcata 17857261  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtt 192  Q
    ||| ||||||||||  || | |||| ||||||||| |  |||| |||||  |||||| |  |||||||||||| ||||    
T  17857262 tctagagctctggaactccgattgaggtgatctttgaagcgttggaaagggtacaaattcatctacatttcatatgtt 17857339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 23016444 - 23016334
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    ||||||| |||||||||| ||||||||||||| |||||| ||||| |||||||| | ||||||||||||||||| || | | |||||||| ||  | |||    
T  23016444 aagaatattaaagtcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcattatgtatttgtcttgtattcatcata 23016346  T
Q  115 tctggagctctg 126  Q
    ||| ||||||||    
T  23016345 tctagagctctg 23016334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 17277677 - 17277720
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattt 58  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  17277677 aagaataataaagtcattatggaataaaagaaccaaattaattt 17277720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 23016778 - 23016690
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgt 104  Q
    ||||||| ||||||| || |||||||||| || ||||||| |||||| |||||| | ||||||||||||||||| || | ||||||||||    
T  23016778 aagaatattaaagtcgttatggaataaaaaaatcaaattatttttgg-ttcaaattgttattttcgtaggtcattatgtatctgtcttgt 23016690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 349
Target Start/End: Original strand, 241046 - 241380
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| ||||    
T  241046 aagaataataaagtcattgcagaataaaagaaccaaattaattttgggtttaaagttttattttcgtaggtcataatatgtctgtcttgttttggctata 241145  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    |||| ||||||||||||| |||||| ||||||||||||||||| |||||||||| || ||||||||||||| ||| ||||| ||| ||| ||||||||||    
T  241146 tctgaagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaagttctctacatttcgtctttttgactcaggagcaaattcggaa 241245  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    |||||| ||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  241246 tatttagtggtgtagaatgagctataagtagaagacgtggttaaagtgtgttagctgaagaattaaaggtggtgtttgtggaattgtaacgtctagacat 241345  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatat 349  Q
    |||||||||||| ||||||||||||||||||||||    
T  241346 aataagccttcaaaaatcaatgtgcaaatgaatat 241380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 245122 - 244789
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  245122 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 245023  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    |||||||||||||||||| |||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||  ||||||| ||    
T  245022 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcgaaa 244923  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    |||||||||||| | |||||| ||||||| ||| ||||||||||||| ||| |||||||||||||||   ||||||||||||| ||||||||||||  ||    
T  244922 tatttaatggtgtaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagctgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaat 244826  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    ||| |||||||||||||||||||||||||||||||||    
T  244825 aattagccttcacaaatcaatgtgcaaatgaatatgt 244789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 29949587 - 29949920
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  29949587 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 29949686  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    |||||||||||||||||| |||||| ||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||||  ||||||||||    
T  29949687 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctatttgattcaagatcaaattcggaa 29949786  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    |||||||||||| | |||||| ||||||| ||| ||||||||||||| ||| |||||||||||||||   ||||||||||||| ||||||||||||  ||    
T  29949787 tatttaatggtgtaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagctgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaat 29949883  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    ||| |||||||||||||||||||||||||||||||||    
T  29949884 aattagccttcacaaatcaatgtgcaaatgaatatgt 29949920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 29951225 - 29951558
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  29951225 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 29951324  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    |||||||||||||||||| |||||| ||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||||  ||||||||||    
T  29951325 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctatttgattcaagatcaaattcggaa 29951424  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    |||||||||||| | |||||| ||||||| ||| ||||||||||||| ||| |||||||||||||||   ||||||||||||| ||||||||||||  ||    
T  29951425 tatttaatggtgtaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagctgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaat 29951521  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    ||| |||||||||||||||||||||||||||||||||    
T  29951522 aattagccttcacaaatcaatgtgcaaatgaatatgt 29951558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 38936717 - 38936828
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38936717 aagaataataaagtcattgtgaaataaaagaaccaaatcaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggctata 38936816  T
Q  115 tctggagctctg 126  Q
    | ||||||||||    
T  38936817 tatggagctctg 38936828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 21352771 - 21352695
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgat 91  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  21352771 aagaataataaagtcattatggaataaaagaacctaattaattttgggttcaaagttttattttcgtaggtcatgat 21352695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 16780615 - 16780797
Alignment:
Q  18 aataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttatatct 117  Q
    |||||||||||||||||| ||||||||||   |||||||||||| |||||  |||||||||||||| ||||||| ||| ||||||||||||| ||||||     
T  16780615 aataataaagtcattgtg-aataaaagaattgaattaattttgg-ttcaatgttttattttcgtagttcatgatgtgtttgtcttgttttggctatatcc 16780712  T
Q  118 ggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaaga 202  Q
    |||  |||||||||| | |||| | ||||||| | || || |||| |||| ||| || ||| |||||| ||||||| | ||||||    
T  16780713 ggaattctggatgtccgattgaggcgatctttgagtccttggaaatcttagaaagttatctgcatttcgtctgtttaactcaaga 16780797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 21352606 - 21352670
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttc 79  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||| |||||| ||||||||||    
T  21352606 aagaataataaagtcattatggaataaaagaacctaattaattttggattcaaagttttattttc 21352670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 23660940 - 23661038
Alignment:
Q  34 tggaataaaa-gaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttatatctggagctctggatgtc 132  Q
    |||||||||| |||||||||||||||||| |||||  | |||||||||||||| || ||||| |||||||||||| || |||||| ||| | ||||||||    
T  23660940 tggaataaaatgaaccaaattaattttggtttcaag-tattattttcgtaggtgattatatgactgtcttgtttttgtcatatctagagttatggatgtc 23661038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 23797630 - 23797532
Alignment:
Q  34 tggaataaaa-gaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttatatctggagctctggatgtc 132  Q
    |||||||||| |||||||||||||||||| |||||  | |||||||||||||| || ||||| |||||||||||| || |||||| ||| | ||||||||    
T  23797630 tggaataaaatgaaccaaattaattttggtttcaag-tattattttcgtaggtgattatatgactgtcttgtttttgtcatatctagagttatggatgtc 23797532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 24157737 - 24157402
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||    
T  24157737 aagaataataaagtcattatggaataaaagaacctaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttagctata 24157638  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    |||||||||||||||||| |||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||| | ||||||||||||||||||    
T  24157637 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttaactcaagagaaaattcggaa 24157538  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    |||||||||||  | |||||| ||||||| ||| ||||||||||||| ||| ||| ||||||||||||||||||||||||||| ||||||||||||  ||    
T  24157537 tatttaatggtttaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagcggaagaattaaaggtggtgtttgtggaattgtaacgtctagaaat 24157438  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    ||||||||||||||||||||| |||||||||||||||    
T  24157437 aataagccttcacaaatcaat-tgcaaatgaatatgt 24157402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 36233308 - 36233641
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  36233308 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 36233407  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    |||||||||||||||||| |||||| | ||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||  ||||||| ||    
T  36233408 tctggagctctggatgtccgtttgaggcgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcgaaa 36233507  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    |||||||||||| | |||||| ||||||| ||| ||||||||||||| ||| |||||||||||||||   ||||||||||||| ||||||||||||  ||    
T  36233508 tatttaatggtgtaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaagctgaagaattaaa---ggtgtttgtggaattgtaacgtctagaaat 36233604  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    ||| |||||||||||||||||||||||||||||||||    
T  36233605 aattagccttcacaaatcaatgtgcaaatgaatatgt 36233641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 20189478 - 20189147
Alignment:
Q  18 aataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttatatct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  20189478 aataataaagtcattgtggaataaaagaaccaaattaattttggtttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatct 20189379  T
Q  118 ggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaatat 217  Q
    |||| |||||||||| |||||| |||||||| |||| ||| ||||| ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||    
T  20189378 ggagttctggatgtccgtttgaggtgatcttcaacttgttggaaagtttacaaaattctctacatttcatctgtttgactcaagagcaaagtcggaatat 20189279  T
Q  218 ttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccataat 317  Q
    ||||||||| | | |||| ||||||| ||| |||| |||||||| ||| |||| |||||||||||||||||||||||||| ||||||||||||  |||||    
T  20189278 ttaatggtgtaaagtgagttgtaagttgaaaacgtagttaaagtgtgtaagcttaagaattaaaggtggtgtttgtggaattgtaacgtctagaaataat 20189179  T
Q  318 aagccttcacaaatcaatgtgcaaatgaatat 349  Q
    ||||||||||||||||||||||||||||||||    
T  20189178 aagccttcacaaatcaatgtgcaaatgaatat 20189147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 20191114 - 20190778
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||| | ||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||  ||||    
T  20191114 aagaataataaagtcattatagaataaaagaacctaattaattttgggttcaaagttttattttcgtatgtcatgatatgtctgtcttgttttgactata 20191015  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    ||||||||| |||||||| |||||| |||||||||||||| || |||||||||| ||||| |||||||||||||||||||| ||||||| ||||||||||    
T  20191014 tctggagctttggatgtccgtttgaggtgatctttaactctttggaaagcttactaaattatctacatttcatctgtttgactcaagagcaaattcggaa 20190915  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    ||||||||| |  | |||||| ||||||| ||| ||||| | ||||| ||| ||||||||||||||||||||||||||||||| |||||||||| |  ||    
T  20190914 tatttaatgttttaaaatgagttgtaagttgaaaacgtgatgaaagtgtgtaagctgaagaattaaaggtggtgtttgtggaattgtaacgtcttgaaat 20190815  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    |||||||||||||||||||||||||||||||||||||    
T  20190814 aataagccttcacaaatcaatgtgcaaatgaatatgt 20190778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 48462802 - 48463074
Alignment:
Q  11 tgagaagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggt 110  Q
    ||||||||||||||||||||||| | || ||||||| |||||||||||| | |||||| ||||||||| |||||||||||||||| |||||||||||||     
T  48462802 tgagaagaataataaagtcattgcgaaa-aaaagaatcaaattaattttagattcaaagttttatttttgtaggtcatgatatgtatgtcttgttttggc 48462900  T
Q  111 tatatctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattc 210  Q
    ||||| ||||||||||||| || |||||| ||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||||| ||||||    
T  48462901 tatatttggagctctggatatccgtttgatgtgatctttaactcgttggaaagcttacgaaattctctacatttcatctatttgattcaagagcaaattc 48463000  T
Q  211 ggaatatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggt 284  Q
    |||||||||||||||  | |||||| ||||||| ||| ||||||||||||| ||| | ||||||||||||||||    
T  48463001 ggaatatttaatggtttaaaatgagttgtaagttgaaaacgtggttaaagtgtgtaaactgaagaattaaaggt 48463074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 36234040 - 36233853
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  36234040 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 36233941  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaaga 202  Q
    |||||||||||||||||| |||||| | ||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||    
T  36233940 tctggagctctggatgtccgtttgaggcgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaaga 36233853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 48464040 - 48463831
Alignment:
Q  13 agaagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggtta 112  Q
    |||| ||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||    
T  48464040 agaataataataaagttattgtggaataaaagaaccaaaataattttgggttcaaa-ttttatttttgtaggtcatgatatgtctgtcttgttttggcta 48463942  T
Q  113 tatctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcgg 212  Q
    |||||||||||||||||||| |||||| ||||||||||||||||| |||||||||| ||||||| |||||||||||||||||| |||  || ||||||||    
T  48463941 tatctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctttacatttcatctgtttgactca--agcaaattcgg 48463844  T
Q  213 aatatttaatggt 225  Q
    ||| |||||||||    
T  48463843 aatttttaatggt 48463831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 20759106 - 20759432
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttgg--tta 112  Q
    ||||||||||||||||||||| ||   |||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||   ||    
T  20759106 aagaataataaagtcattgtgaaa---aagaaccaaattaattttgg-ttcaaagttttattttcgtaggtcatgatatgtatgtcttgttttggctata 20759201  T
Q  113 tatctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcgg 212  Q
    ||| ||||| |||||||||| |  ||| || |||||| ||||  | ||||| ||||||||||||||||||||  ||||        ||||| ||||||||    
T  20759202 tatatggagttctggatgtccgagtgaggtaatcttttactctatggaaagtttacaaaattctctacattttgtctg--------aagagcaaattcgg 20759293  T
Q  213 aatatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagcc 312  Q
    |||||||||||||| | ||||| |||||||| |||||  || ||||||| | | ||||||| |||||||| |||||||||||||| |||||| ||||       
T  20759294 aatatttaatggtgtaaaatgaactgtaagttgaagatatgattaaagtgtataagctgaaaaattaaagatggtgtttgtggaattgtaacatctataa 20759393  T
Q  313 ataataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    |||| ||||||| |  |||||||||||||||||||||||    
T  20759394 ataacaagccttgattaatcaatgtgcaaatgaatatgt 20759432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 40553903 - 40554074
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||| ||||| ||||||||||||| ||||||| |||||| |||||| | ||||||||||||||||| || | |||||||||| ||  | |||    
T  40553903 aagaataataaattcattatggaataaaagaatcaaattatttttgg-ttcaaattgttattttcgtaggtcattatgtatctgtcttgtattcatcata 40554001  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcat 187  Q
    ||| ||||||||||  || | |||| ||||||||| |  |||| |||||  |||||| |  ||||||||||||    
T  40554002 tctagagctctggaactccgattgaggtgatctttgaagcgttggaaagggtacaaattcatctacatttcat 40554074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 40554738 - 40554628
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | ||||||||||||||||| || | |||||||||| ||  | |||    
T  40554738 aagaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcattatgtatctgtcttgtattcatcata 40554640  T
Q  115 tctggagctctg 126  Q
    ||| ||||||||    
T  40554639 tctagagctctg 40554628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 31390149 - 31390237
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgt 104  Q
    |||||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | ||||||||||||||||| || | ||||||||||    
T  31390149 aagaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcattatgtatctgtcttgt 31390237  T

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Target: scaffold0026 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 86583 - 86915
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||| |||||||||||||| |||    |||||||| ||||    
T  86583 aagaataataaagtcattgtggaataaaggaaccaaattaattttgggttcaatgttttatttttgtaggtcatgatatctct----tgttttggctata 86678  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaa 214  Q
    | ||||||||  |||||| |||||| ||||||||||||||||| |||||||||| |||||||||| ||||||||||||||| ||||||| ||||||||||    
T  86679 tatggagctcctgatgtccgtttgaggtgatctttaactcgtttgaaagcttacgaaattctctaaatttcatctgtttgactcaagagcaaattcggaa 86778  T
Q  215 tatttaatggtgcagaatgagctgtaagtagaagacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccat 314  Q
    |||||||||||| | |||||| ||||||  ||| |||||||||||||  || ||||||||||||||||||||||||||||||| |||||||||||   ||    
T  86779 tatttaatggtgtaaaatgagttgtaagctgaaaacgtggttaaagtgagtaagctgaagaattaaaggtggtgtttgtggaattgtaacgtctataaat 86878  T
Q  315 aataagccttcacaaatcaatgtgcaaatgaatatgt 351  Q
    |||||||||||||||||||||||| |||| |||||||    
T  86879 aataagccttcacaaatcaatgtgaaaatcaatatgt 86915  T

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Target: scaffold0026; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 746 - 643
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    ||||||||||||||||||| | |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||    
T  746 aagaataataaagtcattgagaaataaaagaatcaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctatcttgttttggctata 647  T
Q  115 tctg 118  Q
    ||||    
T  646 tctg 643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 31591 - 31762
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||    
T  31591 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtcttattttcgtaggtcatgatatgtctgtcttgttttggctata 31690  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttca 186  Q
    |||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  31691 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacaaaattctctacatttca 31762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 148 - 351
Target Start/End: Complemental strand, 1954 - 1751
Alignment:
Q  148 ttaactcgttcgaaagcttacaaaattctctacatttcatctgtttgagtcaagagaaaattcggaatatttaatggtgcagaatgagctgtaagtagaa 247  Q
    |||||||||| |||||||||   ||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||  | |||||| ||||| | |||    
T  1954 ttaactcgttggaaagcttatggaattctctacatttcatctgtctgactcaagagcaaattcggaatatttaatggtttaaaatgagttgtaatttgaa 1855  T
Q  248 gacgtggttaaagtatgttagctgaagaattaaaggtggtgtttgtggaaatgtaacgtctagccataataagccttcacaaatcaatgtgcaaatgaat 347  Q
     ||||||||||||| ||| ||| ||||||||||||||||||||||||||| ||||||||||||  ||||||||| |||||||||||||||||||||||||    
T  1854 aacgtggttaaagtgtgtaagcggaagaattaaaggtggtgtttgtggaattgtaacgtctagaaataataagctttcacaaatcaatgtgcaaatgaat 1755  T
Q  348 atgt 351  Q
    ||||    
T  1754 atgt 1751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 2051 - 1962
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttt 106  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  2051 aagaataataatgtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgata--tctgtcttgttt 1962  T

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Target: scaffold0096 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 22399 - 22510
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  22399 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctata 22498  T
Q  115 tctggagctctg 126  Q
    ||||||||||||    
T  22499 tctggagctctg 22510  T

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Target: scaffold0021 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 17657 - 17774
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||    
T  17657 aagaataataaagtcagtgttgaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtatgtcttgttttggctata 17756  T
Q  115 tctggagctctggatgtc 132  Q
    ||||||||||||||||||    
T  17757 tctggagctctggatgtc 17774  T

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Target: scaffold0021; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 27188 - 27305
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||    
T  27188 aagaataataaagtcagtgttgaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtatgtcttgttttggctata 27287  T
Q  115 tctggagctctggatgtc 132  Q
    ||||||||||||||||||    
T  27288 tctggagctctggatgtc 27305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 13582 - 13473
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| || | ||||| |||| ||  | |||    
T  13582 aagaataataaagtcattatggaataaaagaaccaaatt-attttgggttcaaatttttattttcgtaggtcattatgtatctgttttgtattcatcata 13484  T
Q  115 tctggagctct 125  Q
    ||| |||||||    
T  13483 tctagagctct 13473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 4225 - 4404
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||||||||| ||||||||||||| |||||| ||||| |||||||| | ||||||||||||||||| || | ||||| |||| ||  | |||    
T  4225 aagaataataaagtcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcattatgtatctgtattgtattcatcata 4323  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtttga 195  Q
    | | |||||||  |  || | |||| |||||||||||  ||||||||||  |||||| |  |||||||||||| |||||||    
T  4324 tttagagctctacaactccgattgaggtgatctttaaagcgttcgaaagggtacaaattcatctacatttcatatgtttga 4404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 375392 - 375259
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | ||||||| ||||||||| || | |||||||||| ||  | |||    
T  375392 aagaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttatttttgtaggtcattatgtatctgtcttgtattcctcata 375294  T
Q  115 tctggagctctggatgtctgtttgaagtgatcttt 149  Q
    ||| ||||||||||  |||| |||| |||||||||    
T  375293 tctagagctctggaactctgattgaggtgatcttt 375259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 5220 - 5396
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    |||||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | ||||||||||||||||| || | | |||||||| ||  | |||    
T  5220 aagaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcattatgtatgtgtcttgtattcatcata 5318  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtt 192  Q
    ||| || |||||||  || | |||| ||||||||| |  |||| |||||  |||||| |  |||||||||||| ||||    
T  5319 tctagaactctggaactccgattgaggtgatctttgaagcgttggaaagggtacaaattcatctacatttcatatgtt 5396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 11481 - 11306
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggttata 114  Q
    ||||||| |||||||||| ||||||||||||| ||||||| |||||| |||||| | ||||||||||||||||| || | |||||||||| ||  | |||    
T  11481 aagaatattaaagtcatt-tggaataaaagaatcaaattatttttgg-ttcaaattgttattttcgtaggtcattatgtatctgtcttgtattcatcata 11384  T
Q  115 tctggagctctggatgtctgtttgaagtgatctttaactcgttcgaaagcttacaaaattctctacatttcatctgtt 192  Q
    ||| |||||||| |  || | |||| ||||||||| |  |||| |||||  |||||| |  |||||||||||| ||||    
T  11383 tctagagctctgcaactccgattgaggtgatctttgaagcgttggaaagggtacaaattcatctacatttcatatgtt 11306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 12037103 - 12037064
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaatta 54  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12037103 aagaataataaagtcattgtggaataaaagaaccaaatta 12037064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 12037016 - 12037053
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaat 52  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12037016 aagaataataaagtcattgtggaataaaagaaccaaat 12037053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 8946 - 8902
Alignment:
Q  15 aagaataataaagtcattgtggaataaaagaaccaaattaatttt 59  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||    
T  8946 aagaataataaagtcattgtggaatataagaaccaagttaatttt 8902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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