View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14619_low_2 (Length: 356)
Name: NF14619_low_2
Description: NF14619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14619_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 112 - 342
Target Start/End: Complemental strand, 11368413 - 11368183
Alignment:
| Q |
112 |
ctcacttatgcaaaagcatagaagagaatccaaaattggtgtgtctaaccaagaaaaatactccacacagcataaaaatagctcctgagtatcttttgga |
211 |
Q |
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| T |
11368413 |
ctcacttatgcaaaagcatagaagagaatccaaaattggtgtgtctaaccaagaaaaatactccacacagcataaaaatagctcctgagtatcttttgga |
11368314 |
T |
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| Q |
212 |
agaaaaagaaaaggaccatagagaataggctctgcaagataaaagttgaaagaattagaggccaagtagcatattatcaacttatcaatgttaaagcatg |
311 |
Q |
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| T |
11368313 |
agaaaaagaaaaggaccatagagaataggctctgcaagataaaagttgaaagaattagaggccaagtagcatattatcaacttatcaatgttaaagcatg |
11368214 |
T |
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| Q |
312 |
ctcaggtttatgtttacctccttctccttga |
342 |
Q |
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| T |
11368213 |
ctcaggtttatgtttacctccttcttcttga |
11368183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 11368524 - 11368477
Alignment:
| Q |
1 |
ttcaatatcatgtatatacaaatcataacatgaggtaaattatcaagt |
48 |
Q |
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| T |
11368524 |
ttcaatatcatgtatatacaaatcataacatgaggtaaattatcaagt |
11368477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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