View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1461_high_16 (Length: 293)
Name: NF1461_high_16
Description: NF1461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1461_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 278
Target Start/End: Original strand, 2967998 - 2968267
Alignment:
| Q |
10 |
gcagagatatttgttaggggtaagtttcatagtgatcaacttaattgattttcaaaataattggaaaattttattggcaattggagggactcgatttttt |
109 |
Q |
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| T |
2967998 |
gcagagatatttgttaggggtaagtttcatagtgatcaacttaattgattttcaaaataattggaaaattttattggcaattggagggactcgatttttt |
2968097 |
T |
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| Q |
110 |
ggcataatccatagatgaatggtgtgatgttaagagatcactttagtagattatacaatttgactagtgataaaaatgttattgttgttgatatgatgtt |
209 |
Q |
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| T |
2968098 |
ggcataatccatagatgaatggtgtgatgttaagagatcactttagtagattatacaatttgactagtgataaaaatgttattgttgttgatatgatgtt |
2968197 |
T |
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| Q |
210 |
gaatgatggagatgaaagtgaatttaggtagagttggaagcataagttatttcaatgg-aagatgaattg |
278 |
Q |
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| T |
2968198 |
gaatgatggagatgaaagtgaatttaggtagagttggaagcataagttatttcaatggaaagatgaattg |
2968267 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 16905249 - 16905207
Alignment:
| Q |
175 |
agtgataaaaatgttattgttgttgatatgatgttgaatgatg |
217 |
Q |
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| T |
16905249 |
agtgataaaaatgttaatgttgttgatatagtgttgaatgatg |
16905207 |
T |
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