View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1461_high_23 (Length: 232)

Name: NF1461_high_23
Description: NF1461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1461_high_23
NF1461_high_23
[»] chr5 (7 HSPs)
chr5 (19-142)||(42803213-42803336)
chr5 (32-136)||(42800090-42800194)
chr5 (48-133)||(25514160-25514245)
chr5 (48-133)||(25521115-25521200)
chr5 (48-116)||(8763841-8763909)
chr5 (48-116)||(8776671-8776739)
chr5 (160-215)||(42803139-42803194)
[»] chr3 (1 HSPs)
chr3 (19-132)||(27906958-27907069)
[»] chr1 (1 HSPs)
chr1 (44-118)||(7387516-7387590)


Alignment Details
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 42803336 - 42803213
Alignment:
Q  19 tctctaatacattttttgtaatgtgcccttaattctgtgtggccgatagaaagttaacttaaatatatgtgttttgagttctaaaaaacattactttttt 118  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||| |||||| | | ||||||||||||||||||||||||||| |||||||||||||    
T  42803336 tctccaatacattttctgtaatgtgcccttaattctgtgtggccgattgaaagtgaccctaaatatatgtgttttgagttctaaaagacattactttttt 42803237  T
Q  119 gtcaagtttgaatccaaaccttag 142  Q
    ||||||||||||||||||||||||    
T  42803236 gtcaagtttgaatccaaaccttag 42803213  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 42800194 - 42800090
Alignment:
Q  32 ttttgtaatgtgcccttaattctgtgtggccgatagaaagttaacttaaatatatgtgttttgagttctaaaaaacattacttttttgtcaagtttgaat 131  Q
    |||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||| |||| ||| ||||||||||||| ||||||||    
T  42800194 ttttgtaatgtgcccttaattctgtgtggccgatcgaaaataaacttaaatatatgtgttttgagttccaaaagacaatacttttttgtcatgtttgaat 42800095  T
Q  132 ccaaa 136  Q
    |||||    
T  42800094 ccaaa 42800090  T

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Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 25514160 - 25514245
Alignment:
Q  48 taattctgtgtggccgatagaaagttaacttaaatatatgtgttttgagttctaaaaaacattacttttttgtcaagtttgaatcc 133  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  25514160 taattctgtgtggccgatcgaaagtgaacttaaatatatgtgttttgagttccaaaagacattacttttttgtcatgtttgaatcc 25514245  T

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Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 25521200 - 25521115
Alignment:
Q  48 taattctgtgtggccgatagaaagttaacttaaatatatgtgttttgagttctaaaaaacattacttttttgtcaagtttgaatcc 133  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  25521200 taattctgtgtggccgatcgaaagtgaacttaaatatatgtgttttgagttccaaaagacattacttttttgtcatgtttgaatcc 25521115  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 8763841 - 8763909
Alignment:
Q  48 taattctgtgtggccgatagaaagttaacttaaatatatgtgttttgagttctaaaaaacattactttt 116  Q
    ||||| |||| ||||||| |||||| |||||||||||||| ||||||||||| |||| |||||||||||    
T  8763841 taattttgtgcggccgatcgaaagtgaacttaaatatatgcgttttgagttccaaaagacattactttt 8763909  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 8776739 - 8776671
Alignment:
Q  48 taattctgtgtggccgatagaaagttaacttaaatatatgtgttttgagttctaaaaaacattactttt 116  Q
    ||||| |||| ||||||| |||||| |||||||||||||| ||||||||||| |||| |||||||||||    
T  8776739 taattttgtgcggccgatcgaaagtgaacttaaatatatgcgttttgagttccaaaagacattactttt 8776671  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 42803194 - 42803139
Alignment:
Q  160 aaggaccaaaccctacctttctttttatgaattaattagtcgaaacctattttaat 215  Q
    |||||||||||| || |||||| ||||||||||||||||||||| |||||||||||    
T  42803194 aaggaccaaaccttagctttctgtttatgaattaattagtcgaagcctattttaat 42803139  T

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Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 27907069 - 27906958
Alignment:
Q  19 tctctaatacattttttgtaatgtgcccttaattctgtgtggccgatagaaagttaacttaaatatatgtgttttgagttctaaaaaacattactttttt 118  Q
    |||| ||| |||||| |||||||||||||||||||| |||||||||| | || | |||||||||||  ||||||||||||| |||| |||||||||| ||    
T  27907069 tctccaatgcattttctgtaatgtgcccttaattctctgtggccgatcgtaaatgaacttaaatat--gtgttttgagttccaaaagacattactttctt 27906972  T
Q  119 gtcaagtttgaatc 132  Q
    |||| |||||||||    
T  27906971 gtcatgtttgaatc 27906958  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 7387516 - 7387590
Alignment:
Q  44 cccttaattctgtgtggccgatagaaagttaacttaaatatatgtgttttgagttctaaaaaacattactttttt 118  Q
    ||||||||||| |||| || || |||| | |||||||||||||||||||||||||| |||| |||||||||||||    
T  7387516 cccttaattctctgtgccctatcgaaaatgaacttaaatatatgtgttttgagttccaaaacacattactttttt 7387590  T

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