View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1461_high_5 (Length: 529)
Name: NF1461_high_5
Description: NF1461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1461_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 11 - 513
Target Start/End: Original strand, 4467863 - 4468365
Alignment:
| Q |
11 |
cacagacatgcaaacataaagaatgagagtaatcagttcccctaatcagcattctaatcacatcatatttcaaagaatcaacccaatgatcattcctatt |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4467863 |
cacacacatgcaaacataaagaatgagagtaatcagttcccctaatcagcattctaatcacatcatatttcaaagaatcaacccaatgatcattcctatt |
4467962 |
T |
|
| Q |
111 |
aatatcttgatgatgcttgtaaatgcaacaaagtgtcccaacttcatttccatgaccaattatatcaccatcacttgctaatttcattgtaacatttttc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4467963 |
aatatcttgatgatgcttgtaaatgcaacaaagtgtcccaacttcatttccatgaccaattatatcaccatcacttgctaatttctttgtaacatttttc |
4468062 |
T |
|
| Q |
211 |
aatatgatagccaaaattttctcagccaccttctccacacgtgattgaagagtttccatcttcttgctgcaatttcaacaaattttacattagaaaacat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4468063 |
aatatgatagccaaaattttctcagccaccttctccacacgtgattgaagagtttccatcttcttgctgcaatttcaacaaattttacattagaaaacat |
4468162 |
T |
|
| Q |
311 |
tatataaataaaattgaagcaatactatcaaatgaagcaataacttaacagtatgtcaaatagtatctgtgtaattagtataatactattatgtacgaag |
410 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4468163 |
tatataaataaaattgaagcaataatatcaaatgaagcaataacttaacagtatgtcaaatagtatctgtgtaattagtataatactattatgtacgaag |
4468262 |
T |
|
| Q |
411 |
tatctaaatttgtcgggataatcgcacattcacgttatcttaattaattgtttgatctaaaacgtaaagaaatattgtttatataagcaataacatgatg |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4468263 |
tatctaaatttgtcgggataatcgcacattcacgtgattttaattaattgtttgatctaaaacgtaaagaaatattgtttatataagcaataacatgatg |
4468362 |
T |
|
| Q |
511 |
aag |
513 |
Q |
| |
|
||| |
|
|
| T |
4468363 |
aag |
4468365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University