View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1461_low_1 (Length: 644)
Name: NF1461_low_1
Description: NF1461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1461_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 16 - 632
Target Start/End: Original strand, 44947637 - 44948253
Alignment:
| Q |
16 |
caacaaactaattgcaagttttggtggatttgtgtttgtgttcagtatatataatttgttgaaggttcgtcgagacagtttgtcaccaaactgtttaggt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44947637 |
caacaaactaattgcaagttttggtggatttgtgtttgtgttcagtatatataatttgttgaaggttcgtcgagacagtttgtcaccaaactgtttagtt |
44947736 |
T |
|
| Q |
116 |
ttttctgaacaatgaattggccttgggcttaattgtcatcccatataagtcaaatcaattttgggtacttgagtttaaagtcgactcaacgattctttta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44947737 |
ttttctgaacaatgaattggccttgggcttaattgtcatcccatataagtcaaatcaattttgggtacttgagtttaaagtcaactcaacgattctttta |
44947836 |
T |
|
| Q |
216 |
cttagctttccgttgaattttgaattactaatgctctttttccattgaaaattgaagggttaagacaaaataaaaccaagatttatcacatggtagaggt |
315 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44947837 |
cttagctttccgttgaattttgaattactaatgccttttttccattgaaaattgaagggttaagacaaaataaagccaagatttatcacatggtagaggt |
44947936 |
T |
|
| Q |
316 |
agactacggaattgaatttgaattccatgtggttaggacaatcatgcattcacacttttgatctatccgattctgattagaagacttgtgtcatgacttt |
415 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44947937 |
agactacggaattaaatttgaattccatgtggttaggacaatcatgcattcacacttttgatctatccgattctgattagaagacttgtgtcatgacttt |
44948036 |
T |
|
| Q |
416 |
gattaaacaatctaaaacacaattggaatgtaagatcagacagctccctgattgcataactacatacaatccattttcatagactatacttagcatcaat |
515 |
Q |
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| T |
44948037 |
gattaaacaatctaaaacacaattggaatgtaagatcagacagctccctgattgcataactacatacaatccattttcatagactatacttagcatcaat |
44948136 |
T |
|
| Q |
516 |
atagtgtgtattttctaactttttagttgcttttggcttaagaatcattaaatccaatgaaaatcttgcttggaagacgcttcatactatatttgcatcc |
615 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44948137 |
atagtgtgtattttctaactttctagttgcttttggcttaagaatcattaaatccaatgaaaatcttgcttggaagacgcttcatactatatttgcatcc |
44948236 |
T |
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| Q |
616 |
tcttctgatttcacctt |
632 |
Q |
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| T |
44948237 |
tcttctgatttcacctt |
44948253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 566 - 632
Target Start/End: Complemental strand, 11450624 - 11450558
Alignment:
| Q |
566 |
aatccaatgaaaatcttgcttggaagacgcttcatactatatttgcatcctcttctgatttcacctt |
632 |
Q |
| |
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| T |
11450624 |
aatccaatgaaaatcttgcctggaagatccttcatactatctttgcatcctcctctgatttcacctt |
11450558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 459 - 514
Target Start/End: Complemental strand, 11450696 - 11450640
Alignment:
| Q |
459 |
ctccctgattgcataactacatacaatccattttcatag-actatacttagcatcaa |
514 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||||||| |||| |||||||||||| |
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| T |
11450696 |
ctccttgattgcataactacatataatccattttcatagtactacacttagcatcaa |
11450640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 461
Target Start/End: Complemental strand, 11450750 - 11450707
Alignment:
| Q |
418 |
ttaaacaatctaaaacacaattggaatgtaagatcagacagctc |
461 |
Q |
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||||| ||||||||||||| | |||||||||||||||||||||| |
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| T |
11450750 |
ttaaataatctaaaacacagtcggaatgtaagatcagacagctc |
11450707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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