View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1461_low_11 (Length: 376)
Name: NF1461_low_11
Description: NF1461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1461_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 56388060 - 56387701
Alignment:
| Q |
1 |
caagatattctaattcgtgaaacgctgcgtatcagtgctgaattagcctcatcatctacaccccttctcccttcagatactaacttcatcggcagcagca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
56388060 |
caagatattctaattcgtgaaacgctgcgtatcagtgctgaattagcctcatcatctacaccccttctcccttcagatactaccttcatcggcagcagca |
56387961 |
T |
|
| Q |
101 |
gattcatctgctgcgaacaaatcgatggccgtagatggaactacgttgccgatactgatgcctctggcaaattcaacaataattcctttcgctctctcag |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56387960 |
gattcatctgttgcgaacaaatcgatggccgtagatggaactacgttgccgatactgatgcctctggcaaattcaacaataattcctttcgctctctcag |
56387861 |
T |
|
| Q |
201 |
tttacaaacccctaaacctcctcttgatgaattcgtctccttcgttagatcctatgttgttcccgaaggcttccctgacagtgttacaccttcctatgtc |
300 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56387860 |
tttacaaacacctaaacctcctcttgatgaattcatctccttcgttagatcctatgttgttcccgaaggcttccctgacagtgttacaccttcctatgtc |
56387761 |
T |
|
| Q |
301 |
ccttacatgacttggagggctctcaagcacttttttggtggagcaatgggtgttttcact |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56387760 |
ccttacatgacttggagggctctcaagcacttttttggtggagcaatgggtgttttcact |
56387701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 100 - 360
Target Start/End: Original strand, 29732705 - 29732965
Alignment:
| Q |
100 |
agattcatctgctgcgaacaaatcgatggccgtagatggaactacgttgccgatactgatgcctctggcaaattcaacaataattcctttcgctctctca |
199 |
Q |
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||||||||||||||||| |||||||||||||| ||||||| ||||| || || || ||||||| || ||||||| |||||||||||||||||||||| |
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| T |
29732705 |
agattcatctgctgcgaggaaatcgatggccgtcgatggaattacgtggcagagaccaatgcctccgggcaattcaagaataattcctttcgctctctca |
29732804 |
T |
|
| Q |
200 |
gtttacaaacccctaaacctcctcttgatgaattcgtctccttcgttagatcctatgttgttcccgaaggcttccctgacagtgttacaccttcctatgt |
299 |
Q |
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| ||||||||||| || ||||||||||||||| | | || ||| ||| |||||| |||||||||||||| |||||| ||| |||||| ||||||||||| |
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| T |
29732805 |
gcttacaaaccccaaagcctcctcttgatgaaatgatgtcattcattacatcctacgttgttcccgaaggtttccctcacactgttaccccttcctatgt |
29732904 |
T |
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| Q |
300 |
cccttacatgacttggagggctctcaagcacttttttggtggagcaatgggtgttttcact |
360 |
Q |
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||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29732905 |
cccctacatgacttggagggctctcaagcactttttcggtggagcaatgggtgttttcact |
29732965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29732612 - 29732649
Alignment:
| Q |
1 |
caagatattctaattcgtgaaacgctgcgtatcagtgc |
38 |
Q |
| |
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|||||||||||||| || |||||||||||||||||||| |
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| T |
29732612 |
caagatattctaatccgcgaaacgctgcgtatcagtgc |
29732649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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